Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
4645 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Myosin VB |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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MYO5B |
SynonymsGene synonyms aliases
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DIAR2, MVID1, PFIC10 |
ChromosomeChromosome number
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18 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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18q21.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene, together with other proteins, may be involved in plasma membrane recycling. Mutations in this gene are associated with microvillous inclusion disease. [provided by RefSeq, Sep 2009] |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs121908103 |
A>C,G |
Pathogenic |
Missense variant, coding sequence variant |
rs121908104 |
C>T |
Pathogenic |
Stop gained, coding sequence variant |
rs121908105 |
G>A,C,T |
Pathogenic |
Missense variant, coding sequence variant |
rs121908106 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs192207329 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant |
rs727505394 |
A>G,T |
Pathogenic |
Splice donor variant |
rs727505395 |
C>T |
Likely-pathogenic |
Intron variant |
rs1053713532 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs1166138315 |
A>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1298330895 |
G>- |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs1555648414 |
C>T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1568049625 |
T>C,G |
Pathogenic |
Splice acceptor variant |
rs1598840811 |
->T |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
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miRNAmiRNA information provided by mirtarbase database.
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|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
Q9ULV0 |
Protein name |
Unconventional myosin-Vb |
Protein function |
May be involved in vesicular trafficking via its association with the CART complex. The CART complex is necessary for efficient transferrin receptor recycling but not for EGFR degradation. Required in a complex with RAB11A and RAB11FIP2 for the |
PDB |
4J5M
,
4LNZ
,
4LWZ
,
4LX0
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00063 |
Myosin_head |
71 → 749 |
Myosin head (motor domain) |
Domain |
PF00612 |
IQ |
765 → 785 |
IQ calmodulin-binding motif |
Motif |
PF00612 |
IQ |
788 → 808 |
IQ calmodulin-binding motif |
Motif |
PF00612 |
IQ |
813 → 833 |
IQ calmodulin-binding motif |
Motif |
PF00612 |
IQ |
836 → 856 |
IQ calmodulin-binding motif |
Motif |
PF00612 |
IQ |
861 → 881 |
IQ calmodulin-binding motif |
Motif |
PF00612 |
IQ |
884 → 904 |
IQ calmodulin-binding motif |
Motif |
PF01843 |
DIL |
1680 → 1783 |
DIL domain |
Family |
|
Sequence |
|
Sequence length |
1848 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Cholestasis |
Cholestasis |
rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 |
18724368 |
Developmental delay |
Global developmental delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
|
Intrahepatic cholestasis |
Cholestasis, progressive familial intrahepatic 1, MYO5B-related progressive familial intrahepatic cholestasis, Progressive familial intrahepatic cholestasis type 1 |
rs121918299, rs80338722, rs80338725, rs80338719, rs80338723, rs80338726, rs72549401, rs11568372, rs1553469602, rs387907317, rs387906354, rs752919965, rs72549397, rs111033609, rs121909099, rs387906381, rs121909100, rs121909101, rs121909104, rs121909105, rs387906526, rs121918440, rs387906527, rs72552778, rs387906529, rs121918443, rs72552780, rs80338724, rs80338715, rs80338727, rs80338729, rs80338716, rs80338717, rs398122839, rs515726137, rs587777519, rs587777520, rs587777521, rs879255644, rs113090017, rs864321695, rs776869985, rs864321697, rs80338720, rs746155190, rs879255504, rs886041948, rs886042562, rs769910565, rs758069019, rs886043807, rs72549402, rs72549395, rs188824058, rs763782349, rs375315619, rs754287486, rs1057518679, rs1060499649, rs1060499579, rs1554660803, rs1554407511, rs774824767, rs771690686, rs752992432, rs1553466082, rs72549396, rs772294884, rs764513998, rs1202682161, rs759202962, rs1562774655, rs1562831765, rs1562945221, rs917981474, rs1558927163, rs765889649, rs1562976061, rs72549399, rs1459273753, rs377160065, rs1559183717, rs760750012, rs1051861187, rs1558898789, rs928915940, rs752757689, rs1584678508, rs764581483, rs1574453508, rs751511532, rs1182781290, rs376368459, rs762702807, rs1578499691, rs199791850, rs1452792080, rs1458423947, rs1584747270, rs1584750653, rs1599066459, rs1599069873, rs1599166106, rs1574462504, rs1593114820, rs1057524081, rs1588081022, rs777460754, rs1251192873, rs1588117076, rs748671901, rs139314808, rs749009273, rs1588080674, rs1588080680, rs1588127136, rs1588135086, rs757693457, rs1574445178, rs768922690, rs1584422832, rs1584433525, rs1312396424, rs1792048079, rs774411820, rs575729461 |
27532546 |
Myopia |
Myopia |
rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805, rs782555528, rs1554862601, rs1586620121, rs1387950081, rs2051026773, rs1422332023 |
27182965 |
Schizophrenia |
Schizophrenia |
rs74315508, rs74315509, rs13447324, rs1558507406, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346, rs863223347, rs863223351, rs863223352, rs61734270, rs797045205, rs869312829, rs869312830, rs770913157, rs869312832, rs869312831, rs781720548, rs1262969313 |
23561489 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Bipolar disorder |
Bipolar Disorder |
|
18317468 |
Hyperchloremia |
Hyperchloremia |
|
|
Inborn errors of metabolism |
Inborn Errors of Metabolism |
|
18724368 |
Intestinal diseases |
Intestinal Diseases |
|
18724368 |
Liver neoplasms |
Liver neoplasms |
|
25058030 |
Liver cancer |
Malignant neoplasm of liver |
|
25058030 |
Malnutrition |
Malnutrition |
|
|
Microvillus inclusion disease |
Microvillus inclusion disease |
|
19006234, 18724368, 29266534, 24892806, 20186687, 21206382, 24138727 |
Nephrocalcinosis |
Nephrocalcinosis |
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