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LIPA (lipase A, lysosomal acid type)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3988
Gene nameGene Name - the full gene name approved by the HGNC.
Lipase A, lysosomal acid type
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
LIPA
SynonymsGene synonyms aliases
CESD, LAL
ChromosomeChromosome number
10
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q23.31
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes lipase A, the lysosomal acid lipase (also known as cholesterol ester hydrolase). This enzyme functions in the lysosome to catalyze the hydrolysis of cholesteryl esters and triglycerides. Mutations in this gene can result in Wolman diseas
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2228159 A>C,G,T Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs116928232 C>G,T Pathogenic, pathogenic-likely-pathogenic, likely-pathogenic Synonymous variant, missense variant, coding sequence variant
rs121965086 A>G Pathogenic, pathogenic-likely-pathogenic Missense variant, coding sequence variant
rs121965087 G>C Pathogenic Intron variant, stop gained, coding sequence variant
rs139282720 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018033 hsa-miR-335-5p Microarray 18185580
MIRT024588 hsa-miR-215-5p Microarray 19074876
MIRT026530 hsa-miR-192-5p Microarray 19074876
MIRT037705 hsa-miR-744-5p CLASH 23622248
MIRT054198 hsa-miR-125b-5p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 22723551
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IEA
GO:0001650 Component Fibrillar center IDA
GO:0004771 Function Sterol esterase activity IBA 21873635
GO:0004771 Function Sterol esterase activity IDA 1718995, 7204383, 8112342, 15269241
GO:0004771 Function Sterol esterase activity IMP 9633819
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P38571
Protein name Lysosomal acid lipase/cholesteryl ester hydrolase (Acid cholesteryl ester hydrolase) (LAL) (EC 3.1.1.13) (Cholesteryl esterase) (Diacylglycerol lipase) (Lipase A) (Sterol esterase) (Triacylglycerol ester hydrolase) (Triacylglycerol lipase)
Protein function Catalyzes the deacylation of cholesteryl ester core lipids of endocytosed low density lipoproteins to generate free fatty acids and cholesterol (PubMed:15269241, PubMed:1718995, PubMed:7204383, PubMed:8112342, PubMed:9633819). Hydrolyzes triglyc
PDB 6V7N
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00561 Abhydrolase_1
80 381
alpha/beta hydrolase fold
Domain
Sequence
Sequence length 399
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Steroid biosynthesis
Lysosome
Efferocytosis
Cholesterol metabolism
  LDL clearance
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 8254026
Coronary artery disease CORONARY ARTERY DISEASE, AUTOSOMAL DOMINANT, 1, Coronary Artery Disease rs137852988, rs121918313, rs121918529, rs121918531, rs137852340, rs405509, rs1555800701, rs1215189537 23202125, 28714975, 26343387, 21378988, 29212778
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Adrenal calcification Adrenal calcification
Arteriosclerosis Arteriosclerosis
Cholesterol ester storage disease Cholesterol Ester Storage Disease, Cholesteryl ester storage disease 8254026, 27604308, 24295952, 22227072
Cirrhosis Cirrhosis rs119465999, rs144369314, rs8056684, rs112053857, rs75998507

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