Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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3930 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Lamin B receptor |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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LBR |
SynonymsGene synonyms aliases
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C14SR, DHCR14B, LMN2R, PHA, PHASK, TDRD18 |
ChromosomeChromosome number
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1 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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1q42.12 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene belongs to the ERG4/ERG24 family. It localized in the nuclear envelope inner membrane and anchors the lamina and the heterochromatin to the membrane. It may mediate interaction between chromatin and lamin B. Mutations of t |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs148541545 |
C>T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant, non coding transcript variant |
rs200180113 |
G>A |
Likely-pathogenic |
Missense variant, intron variant, coding sequence variant |
rs374343844 |
T>A,C |
Pathogenic |
Coding sequence variant, missense variant, non coding transcript variant |
rs387906416 |
TAGAAGA>CTTCTAG |
Pathogenic |
Inframe indel, coding sequence variant, stop gained, non coding transcript variant |
rs573510559 |
C>T |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs587777171 |
T>C |
Likely-pathogenic |
Coding sequence variant, missense variant, non coding transcript variant |
rs587777172 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant, non coding transcript variant |
rs754049402 |
C>T |
Uncertain-significance, pathogenic |
Coding sequence variant, non coding transcript variant, missense variant |
rs863223326 |
ACCA>- |
Pathogenic |
Coding sequence variant, frameshift variant, non coding transcript variant |
rs869312905 |
G>A |
Pathogenic |
Coding sequence variant, stop gained, non coding transcript variant |
rs886037616 |
ATAAAA>- |
Pathogenic |
Intron variant |
rs886037655 |
A>- |
Pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
rs1057516045 |
G>A |
Likely-pathogenic |
Stop gained, coding sequence variant, non coding transcript variant |
rs1131691304 |
G>C |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs1236962991 |
C>T |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs1558655670 |
ATG>TTTCTCATCA |
Pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
Q14739 |
Protein name |
Delta(14)-sterol reductase LBR (Delta-14-SR) (EC 1.3.1.70) (3-beta-hydroxysterol Delta (14)-reductase) (C-14 sterol reductase) (C14SR) (Integral nuclear envelope inner membrane protein) (LMN2R) (Lamin-B receptor) (Sterol C14-reductase) |
Protein function |
Catalyzes the reduction of the C14-unsaturated bond of lanosterol, as part of the metabolic pathway leading to cholesterol biosynthesis (PubMed:12618959, PubMed:16784888, PubMed:21327084, PubMed:27336722, PubMed:9630650). Plays a critical role i |
PDB |
2DIG
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF09465 |
LBR_tudor |
1 → 55 |
Lamin-B receptor of TUDOR domain |
Domain |
PF01222 |
ERG4_ERG24 |
183 → 615 |
Ergosterol biosynthesis ERG4/ERG24 family |
Family |
|
Sequence |
|
Sequence length |
615 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Arthritis |
Arthritis |
rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 |
|
Brachydactyly |
Brachydactyly |
rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142 |
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Developmental delay |
Global developmental delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
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Greenberg dysplasia |
HEM dysplasia, Greenberg dysplasia |
rs387906416, rs587777171, rs587777172, rs863223326, rs886037655, rs374343844, rs869312905, rs573510559 |
27336722, 8213919, 18382993, 27830109, 23824842, 12618959, 29068549, 21327084 |
Hydrops fetalis |
Hydrops Fetalis, Non-Immune |
rs28935477, rs1131691986 |
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Hyperbilirubinemia |
Hyperbilirubinemia |
rs34993780, rs587784535, rs797046090, rs797046091 |
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Jeune thoracic dystrophy |
Jeune thoracic dystrophy |
rs137853025, rs137853028, rs137853030, rs137853031, rs137853032, rs431905500, rs201188361, rs587776909, rs397514637, rs431905507, rs199952377, rs431905521, rs587777352, rs750396637, rs755338872, rs794727595, rs776315442, rs780539887, rs864622358, rs864622111, rs200460601, rs755883373, rs878852996, rs754919042, rs770185023, rs201858128, rs771487311, rs773858865, rs1043384862, rs562139820, rs771003300, rs754049402, rs552436294, rs943680446, rs746068882, rs368631447, rs1202784860, rs1236962991, rs1453462442, rs1553316926, rs776631281, rs764906529, rs1553753582, rs372576954, rs1553905326, rs748656635, rs377160857, rs1215108056, rs772599282, rs1191056931, rs745603321, rs1553815019, rs1553836165, rs761707323, rs1554770453, rs1554771175, rs555811074, rs755305630, rs771511132, rs762873763, rs764769351, rs369614706, rs371011047, rs748906528, rs1555042801, rs1555043520, rs373335226, rs1555049536, rs1555051720, rs745870321, rs1555052511, rs1555052524, rs1555053115, rs901629870, rs762666243, rs1555056464, rs1380132788, rs1555057838, rs753662982, rs747348765, rs1555063811, rs537704873, rs1350329646, rs758155107, rs1196317554, rs747857715, rs969015057, rs1555068270, rs1555068636, rs1555070451, rs1555071484, rs1555071503, rs776407305, rs373924400, rs1218198013, rs780600124, rs1261505725, rs200710887, rs1555081345, rs181011657, rs759649136, rs1555098222, rs1453448143, rs766816050, rs368654019, rs1555052497, rs1223907858, rs759549373, rs1555096711, rs200335504, rs1555038664, rs747165335, rs1565311145, rs1565317399, rs1260978141, rs1565329461, rs767846762, rs376892534, rs1566883760, rs1309577378, rs1565423740, rs1565371538, rs1565359085, rs1159774355, rs1291197898, rs751891969, rs1565390180, rs1558104145, rs1401798992, rs561778796, rs1266078341, rs1565368793, rs373536938, rs765454943, rs1160036887, rs767206815, rs372878677 |
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Macrocephaly |
Macrocephaly |
rs786204854, rs764333096, rs1557739557 |
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Polydactyly |
Polydactyly |
rs1583729398, rs121917709, rs1583734240, rs121917714, rs397507422, rs398122899, rs587776959, rs386833752, rs1057518698, rs1060499558, rs755938967, rs1375768446, rs1309855392, rs1565601979, rs748321474, rs368652620, rs1562587032, rs760694987 |
29068549 |
Seizure |
Tonic - clonic seizures |
rs587784365, rs28939683, rs74315390, rs28939684, rs74315391, rs267607198, rs74315392, rs118192244, rs118192250, rs121917749, rs121917750, rs121917751, rs121917752, rs267606670, rs267607061, rs121912707, rs118192249, rs118192251, rs118192217, rs118192218, rs118192219, rs118192222, rs118192226, rs118192228, rs118192234, rs118192236, rs118192235, rs118192241, rs118192242, rs118192185, rs118192188, rs118192245, rs118192246, rs118192186, rs118192194, rs118192197, rs118192199, rs118192201, rs118192202, rs118192203, rs118192204, rs118192205, rs118192206, rs118192208, rs118192211, rs118192216, rs118192239, rs387906684, rs387906686, rs387906687, rs1596893185, rs387907126, rs387907281, rs397515405, rs587778771, rs730882067, rs730882073, rs397514579, rs397514582, rs587776976, rs398122394, rs121918784, rs121918751, rs121918735, rs398123588, rs587780450, rs61749751, rs587777620, rs727503974, rs730882124, rs794726710, rs794726697, rs794726799, rs794727444, rs794727740, rs796053166, rs794726825, rs796052676, rs796053219, rs796053220, rs796053228, rs796052653, rs759584387, rs796052650, rs796052641, rs796052626, rs796052623, rs796052663, rs796052615, rs796052802, rs797044999, rs797045047, rs797045942, rs797045941, rs118192212, rs797044938, rs777257591, rs864321712, rs879255652, rs886039268, rs886039517, rs886039529, rs199497486, rs886039496, rs886039903, rs886041300, rs769827124, rs886041339, rs886041591, rs587783092, rs1555850151, rs1057516123, rs1057516121, rs1057516115, rs1057516111, rs1057516106, rs1057516105, rs756921902, rs1057516089, rs1057516087, rs1057516080, rs1057516076, rs1060499544, rs1555850512, rs1057517919, rs118192231, rs1057520413, rs1060503101, rs1064796294, rs1064794981, rs1064794632, rs1064797245, rs1131691830, rs1131692231, rs1131691936, rs1554626549, rs1553579225, rs1553531385, rs121918736, rs1554898088, rs1553579282, rs763353895, rs1553463119, rs1554093891, rs77838305, rs1555408401, rs1554627439, rs1554097873, rs1555850403, rs1064794719, rs1315483224, rs1567134495, rs770187706, rs1057518555, rs1576983339, rs1574192005, rs1459374430, rs1586800133, rs1574641522, rs1572096837, rs1572630269, rs1574554892, rs1574556643, rs1574571769, rs1574641605, rs1574697769, rs1574716524, rs1574746733, rs1574746935, rs1574752700, rs1574754680, rs863225030, rs1601545088, rs1600714727, rs1371059392, rs1600767259, rs1339542565, rs1600785769, rs2065899210, rs1600732174, rs1162306056, rs879255709, rs1900111672, rs2066910297, rs1554122080, rs796052941, rs1600789325, rs2082695884, rs1737677036, rs1737495759, rs868389022, rs1737685202, rs1737672350, rs762737130 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Biliary cirrhosis |
Biliary cirrhosis |
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Calcification of trachea |
Calcification of trachea |
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Calcinosis cutis |
Calcinosis cutis |
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Cirrhosis |
Cirrhosis |
rs119465999, rs144369314, rs8056684, rs112053857, rs75998507 |
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Congenital exomphalos |
Congenital exomphalos |
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Pulmonary hypoplasia |
Congenital hypoplasia of lung |
rs1569032634 |
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Congenital malrotation of intestine |
Congenital malrotation of intestine |
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Congenital omphalocele |
Congenital omphalocele |
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Defect of skull ossification |
Defect of skull ossification |
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Dysphagia |
Deglutition Disorders |
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Encephalitis |
Encephalitis |
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Foot polydactyly |
Postaxial foot polydactyly |
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Frontal bossing |
Frontal bossing |
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Gastroesophageal reflux disease |
Gastroesophageal reflux disease |
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Hepatic calcification |
Hepatic calcification |
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Hypoplasia of the maxilla |
Hypoplasia of the maxilla |
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Keratoconjunctivitis sicca |
Keratoconjunctivitis Sicca |
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Laryngeal calcification |
Laryngeal calcification |
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Cystic hygroma |
Lymphangioma, Cystic |
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Mesomelia |
Mesomelia |
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29068549 |
Micrognathism |
Micrognathism |
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Micromelia |
Micromelia |
|
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Otitis media |
Recurrent otitis media |
rs601338, rs1047781, rs1800028 |
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Pelger-huet anomaly |
Pelger-Huet Anomaly |
|
14617022, 26938784, 23824842 |
Pleural effusion |
Pleural effusion disorder |
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Raynaud phenomenon |
Raynaud Phenomenon |
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Regressive spondylometaphyseal dysplasia |
PELGER-HUET ANOMALY WITH MILD SKELETAL ANOMALIES, Regressive spondylometaphyseal dysplasia |
|
21327105, 23824842, 19940018, 25348816, 12490533 |
Reynolds syndrome |
Reynolds syndrome |
|
20522425, 23824842 |
Rhizomelia |
Rhizomelia |
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29068549 |
Sclerodactyly |
Sclerodactyly |
|
|
Scleroderma |
Scleroderma, Systemic Scleroderma |
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Short-limb dwarfism |
Severe short-limb dwarfism |
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Spade-like hand |
Spade-like hand |
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Strabismus |
Strabismus |
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Postaxial hand polydactyly |
Ulnar polydactyly of fingers |
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