GediPNet logo

LAMB1 (laminin subunit beta 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3912
Gene nameGene Name - the full gene name approved by the HGNC.
Laminin subunit beta 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
LAMB1
SynonymsGene synonyms aliases
CLM, LIS5
ChromosomeChromosome number
7
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q31.1
SummarySummary of gene provided in NCBI Entrez Gene.
Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, n
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs140146478 G>C Conflicting-interpretations-of-pathogenicity, likely-benign Non coding transcript variant, coding sequence variant, missense variant
rs149204722 C>T Conflicting-interpretations-of-pathogenicity, likely-benign Non coding transcript variant, coding sequence variant, missense variant
rs387907343 TGACCAGTGGCTTT>ATTAGGAAGACACAAGCACATTAGGAAGACACAAGCACTGG Pathogenic Non coding transcript variant, coding sequence variant, inframe indel, stop gained
rs387907344 C>A Pathogenic Splice donor variant
rs780369106 G>A,C Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, non coding transcript variant, synonymous variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019028 hsa-miR-335-5p Microarray 18185580
MIRT032050 hsa-miR-16-5p Proteomics 18668040
MIRT045771 hsa-miR-125a-5p CLASH 23622248
MIRT041314 hsa-miR-193b-3p CLASH 23622248
MIRT041153 hsa-miR-500a-3p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
NANOG Repression 15983365
SSB Activation 21896617
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005178 Function Integrin binding IBA 21873635
GO:0005198 Function Structural molecule activity NAS 10842354
GO:0005201 Function Extracellular matrix structural constituent IBA 21873635
GO:0005201 Function Extracellular matrix structural constituent IDA 16289578
GO:0005201 Function Extracellular matrix structural constituent ISS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P07942
Protein name Laminin subunit beta-1 (Laminin B1 chain) (Laminin-1 subunit beta) (Laminin-10 subunit beta) (Laminin-12 subunit beta) (Laminin-2 subunit beta) (Laminin-6 subunit beta) (Laminin-8 subunit beta)
Protein function Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Involved in the
PDB 5XAU , 7CEC , 8DMK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00055 Laminin_N
35 269
Laminin N-terminal (Domain VI)
Family
PF00053 Laminin_EGF
271 332
Laminin EGF domain
Domain
PF00053 Laminin_EGF
335 395
Laminin EGF domain
Domain
PF00053 Laminin_EGF
398 455
Laminin EGF domain
Domain
PF00053 Laminin_EGF
458 507
Laminin EGF domain
Domain
PF00053 Laminin_EGF
510 555
Laminin EGF domain
Domain
PF00053 Laminin_EGF
773 818
Laminin EGF domain
Domain
PF00053 Laminin_EGF
821 866
Laminin EGF domain
Domain
PF00053 Laminin_EGF
867 914
Laminin EGF domain
Domain
PF00053 Laminin_EGF
917 973
Laminin EGF domain
Domain
PF00053 Laminin_EGF
976 1025
Laminin EGF domain
Domain
PF00053 Laminin_EGF
1028 1081
Laminin EGF domain
Domain
PF00053 Laminin_EGF
1084 1131
Laminin EGF domain
Domain
PF00053 Laminin_EGF
1132 1182
Laminin EGF domain
Domain
Sequence
MGLLQLLAFSFLALCRARVRAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHK
PEPYCIVSHLQEDKKCFICNSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGVEN
VTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWGVYRYFAYDCEASFPGISTG
PMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLRIKFVKL
HTLGDNLLDSRMEIREKYYYAVYDMVVRG
NCFCYGHASECAPVDGFNEEVEGMVHGHCMC
RHNTKGLNCELCMDFYHDLPWRPAEGRNSNAC
KKCNCNEHSISCHFDMAVYLATGNVSGG
VCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNFC
ERCTCDPAGSQNEGICDSYTDFSTG
LIAGQCRCKLNVEGEHCDVCKEGFYDLSSEDPFGC
KSCACNPLGTIPGGNPCDSETGHCY
CKRLVTGQHCDQCLPEHWGLSNDLDGC
RPCDCDLGGALNNSCFAESGQCSCRPHMIGRQC
NEVEPGYYFATLDHY
LYEAEEANLGPGVSIVERQYIQDRIPSWTGAGFVRVPEGAYLEFF
IDNIPYSMEYDILIRYEPQLPDHWEKAVITVQRPGRIPTSSRCGNTIPDDDNQVVSLSPG
SRYVVLPRPVCFEKGTNYTVRLELPQYTSSDSDVESPYTLIDSLVLMPYCKSLDIFTVGG
SGDGVVTNSAWETFQRYRCLENSRSVVKTPMTDVCRNIIFSISALLHQTGLACECDPQGS
LSSVCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPSGC
KPCECHLQGSVNAFCNPVTGQC
HCFQGVYARQCDRCLPGHWGFPSCQP
CQCNGHADDCDPVTGECLNCQDYTMGHNCERCLA
GYYGDPIIGSGDHC
RPCPCPDGPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCAS
GYFGNPSEVGGSC
QPCQCHNNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYGDA
LQQDC
RKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTG
C
DPCNCNAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPDVECRACDCDPRGIE
TPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFPDCTPCHQC
FALWDVIIAELTNRTHRF
LEKAKALKISGVIGPYRETVDSVERKVSEIKDILAQSPAAEPLKNIGNLFEEAEKLIKDV
TEMMAQVEVKLSDTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDS
ITKYFQMSLEAEERVNASTTEPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLLDE
LAGKLQSLDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAHNA
WQKAMDLDQDVLSALAEVEQLSKMVSEAKLRADEAKQSAEDILLKTNATKEKMDKSNEEL
RNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVI
LQHSAADIARAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDI
QGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVVYTVK
QSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLAQANSKLQLL
KDLERKYEDNQRYLEDKAQELARLEGEVRSLLKDISQKVAVYSTCL
Sequence length 1786
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  PI3K-Akt signaling pathway
Focal adhesion
ECM-receptor interaction
Toxoplasmosis
Amoebiasis
Human papillomavirus infection
Pathways in cancer
Small cell lung cancer
  Laminin interactions
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
MET activates PTK2 signaling
Post-translational protein phosphorylation
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Autism Autistic Disorder rs121964908, rs121912597, rs2710102, rs7794745, rs142990298, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699, rs1553510219, rs1684182454, rs1559060428, rs1553510677, rs1576352885, rs1574152522, rs1574152672, rs1696658542, rs1751123722, rs1750373491, rs1751075634 15523497
Cobblestone lissencephaly without muscular or ocular involvement Cobblestone lissencephaly without muscular or ocular involvement rs387907343, rs387907344, rs879255266, rs879255267
Congenital ocular coloboma Congenital ocular coloboma (disorder) rs587778875, rs587777249, rs767611891, rs2091986259, rs2091987023, rs2091988799 18809619
Hydrocephalus Hydrocephalus rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546
Unknown
Disease name Disease term dbSNP ID References
Acquired porencephaly Acquired porencephaly
Agyria Agyria
Alveolitis Alveolitis, Fibrosing 28444932
Cerebellar hypoplasia Cerebellar Hypoplasia

| © 2021, Biomedical Informatics Centre, NIRRH |
ICMR-National Institute for Research in Reproductive Health, Jehangir Merwanji Street, Parel, Mumbai-400012
Tel: +91-22-24192104, Fax No: +91-22-24139412