ITGA6 (integrin subunit alpha 6)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
3655 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Integrin subunit alpha 6 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
ITGA6 |
SynonymsGene synonyms aliases
|
CD49f, ITGA6A, ITGA6B, JEB6, VLA-6 |
ChromosomeChromosome number
|
2 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
2q31.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
The gene encodes a member of the integrin alpha chain family of proteins. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain that function in cell surface adhesion and signaling. The encoded preproprotein is |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs863223349 |
AGA>- |
Likely-pathogenic |
Coding sequence variant, 3 prime UTR variant, inframe deletion |
rs1559159868 |
A>- |
Pathogenic |
Coding sequence variant, frameshift variant, intron variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
miRTarBase ID |
miRNA |
Experiments |
Reference |
MIRT023546 |
hsa-miR-1-3p |
Proteomics |
18668040 |
MIRT023546 |
hsa-miR-1-3p |
Microarray |
18668037 |
MIRT025291 |
hsa-miR-34a-5p |
Proteomics |
21566225 |
MIRT028271 |
hsa-miR-32-5p |
Sequencing |
20371350 |
MIRT028474 |
hsa-miR-30a-5p |
Proteomics |
18668040 |
MIRT046458 |
hsa-miR-15b-5p |
CLASH |
23622248 |
MIRT437371 |
hsa-miR-29c-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437371 |
hsa-miR-29c-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437371 |
hsa-miR-29c-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437371 |
hsa-miR-29c-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437373 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437373 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437373 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437373 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
24091622 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR |
23354167 |
MIRT437372 |
hsa-miR-29b-3p |
Luciferase reporter assay, qRT-PCR |
23354167 |
MIRT086118 |
hsa-miR-92b-3p |
Luciferase reporter assay, Western blot |
28036265 |
MIRT086118 |
hsa-miR-92b-3p |
Luciferase reporter assay, Western blot |
28036265 |
MIRT735096 |
hsa-miR-302b-3p |
Western blotting, qRT-PCR |
32806777 |
MIRT739675 |
hsa-miR-181a |
CLIP-seq |
|
MIRT739672 |
hsa-miR-181b |
CLIP-seq |
|
MIRT739671 |
hsa-miR-181c |
CLIP-seq |
|
MIRT739674 |
hsa-miR-181d |
CLIP-seq |
|
MIRT739673 |
hsa-miR-4262 |
CLIP-seq |
|
MIRT739676 |
hsa-miR-4436a |
CLIP-seq |
|
MIRT1073653 |
hsa-miR-103a |
CLIP-seq |
|
MIRT1073654 |
hsa-miR-107 |
CLIP-seq |
|
MIRT1073655 |
hsa-miR-1224-5p |
CLIP-seq |
|
MIRT1073656 |
hsa-miR-1252 |
CLIP-seq |
|
MIRT1073657 |
hsa-miR-1265 |
CLIP-seq |
|
MIRT1073658 |
hsa-miR-1267 |
CLIP-seq |
|
MIRT1073659 |
hsa-miR-129-5p |
CLIP-seq |
|
MIRT1073660 |
hsa-miR-1301 |
CLIP-seq |
|
MIRT1073661 |
hsa-miR-1468 |
CLIP-seq |
|
MIRT1073662 |
hsa-miR-1537 |
CLIP-seq |
|
MIRT1073663 |
hsa-miR-208a |
CLIP-seq |
|
MIRT1073664 |
hsa-miR-208b |
CLIP-seq |
|
MIRT1073665 |
hsa-miR-224 |
CLIP-seq |
|
MIRT1073666 |
hsa-miR-2392 |
CLIP-seq |
|
MIRT1073667 |
hsa-miR-25 |
CLIP-seq |
|
MIRT1073668 |
hsa-miR-300 |
CLIP-seq |
|
MIRT1073669 |
hsa-miR-3157-5p |
CLIP-seq |
|
MIRT1073670 |
hsa-miR-3171 |
CLIP-seq |
|
MIRT1073671 |
hsa-miR-3174 |
CLIP-seq |
|
MIRT1073672 |
hsa-miR-32 |
CLIP-seq |
|
MIRT1073673 |
hsa-miR-3617 |
CLIP-seq |
|
MIRT1073674 |
hsa-miR-363 |
CLIP-seq |
|
MIRT1073675 |
hsa-miR-3646 |
CLIP-seq |
|
MIRT1073676 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT1073677 |
hsa-miR-3662 |
CLIP-seq |
|
MIRT1073678 |
hsa-miR-367 |
CLIP-seq |
|
MIRT1073679 |
hsa-miR-377 |
CLIP-seq |
|
MIRT1073680 |
hsa-miR-381 |
CLIP-seq |
|
MIRT1073681 |
hsa-miR-3915 |
CLIP-seq |
|
MIRT1073682 |
hsa-miR-3976 |
CLIP-seq |
|
MIRT1073683 |
hsa-miR-4261 |
CLIP-seq |
|
MIRT1073684 |
hsa-miR-4282 |
CLIP-seq |
|
MIRT1073685 |
hsa-miR-4468 |
CLIP-seq |
|
MIRT1073686 |
hsa-miR-4496 |
CLIP-seq |
|
MIRT1073687 |
hsa-miR-450b-5p |
CLIP-seq |
|
MIRT1073688 |
hsa-miR-4519 |
CLIP-seq |
|
MIRT1073689 |
hsa-miR-4640-3p |
CLIP-seq |
|
MIRT1073690 |
hsa-miR-4666-3p |
CLIP-seq |
|
MIRT1073691 |
hsa-miR-4678 |
CLIP-seq |
|
MIRT1073692 |
hsa-miR-4689 |
CLIP-seq |
|
MIRT1073693 |
hsa-miR-4691-3p |
CLIP-seq |
|
MIRT1073694 |
hsa-miR-4722-3p |
CLIP-seq |
|
MIRT1073695 |
hsa-miR-4769-3p |
CLIP-seq |
|
MIRT1073696 |
hsa-miR-4789-5p |
CLIP-seq |
|
MIRT1073697 |
hsa-miR-494 |
CLIP-seq |
|
MIRT1073698 |
hsa-miR-499-3p |
CLIP-seq |
|
MIRT1073699 |
hsa-miR-499-5p |
CLIP-seq |
|
MIRT1073700 |
hsa-miR-499a-3p |
CLIP-seq |
|
MIRT1073701 |
hsa-miR-5047 |
CLIP-seq |
|
MIRT1073702 |
hsa-miR-507 |
CLIP-seq |
|
MIRT1073703 |
hsa-miR-548u |
CLIP-seq |
|
MIRT1073704 |
hsa-miR-557 |
CLIP-seq |
|
MIRT1073705 |
hsa-miR-641 |
CLIP-seq |
|
MIRT1073706 |
hsa-miR-653 |
CLIP-seq |
|
MIRT1073707 |
hsa-miR-92a |
CLIP-seq |
|
MIRT1073708 |
hsa-miR-92b |
CLIP-seq |
|
MIRT2018199 |
hsa-miR-1283 |
CLIP-seq |
|
MIRT2018200 |
hsa-miR-142-5p |
CLIP-seq |
|
MIRT2018201 |
hsa-miR-3140-5p |
CLIP-seq |
|
MIRT2018202 |
hsa-miR-340 |
CLIP-seq |
|
MIRT1073685 |
hsa-miR-4468 |
CLIP-seq |
|
MIRT2018203 |
hsa-miR-4729 |
CLIP-seq |
|
MIRT2018204 |
hsa-miR-548g |
CLIP-seq |
|
MIRT2018205 |
hsa-miR-892a |
CLIP-seq |
|
MIRT1073657 |
hsa-miR-1265 |
CLIP-seq |
|
MIRT2250078 |
hsa-miR-186 |
CLIP-seq |
|
MIRT1073663 |
hsa-miR-208a |
CLIP-seq |
|
MIRT1073664 |
hsa-miR-208b |
CLIP-seq |
|
MIRT1073666 |
hsa-miR-2392 |
CLIP-seq |
|
MIRT1073667 |
hsa-miR-25 |
CLIP-seq |
|
MIRT2250079 |
hsa-miR-3133 |
CLIP-seq |
|
MIRT1073672 |
hsa-miR-32 |
CLIP-seq |
|
MIRT1073673 |
hsa-miR-3617 |
CLIP-seq |
|
MIRT1073674 |
hsa-miR-363 |
CLIP-seq |
|
MIRT1073676 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT1073678 |
hsa-miR-367 |
CLIP-seq |
|
MIRT1073691 |
hsa-miR-4678 |
CLIP-seq |
|
MIRT1073698 |
hsa-miR-499-3p |
CLIP-seq |
|
MIRT1073699 |
hsa-miR-499-5p |
CLIP-seq |
|
MIRT1073700 |
hsa-miR-499a-3p |
CLIP-seq |
|
MIRT2250080 |
hsa-miR-548al |
CLIP-seq |
|
MIRT2250081 |
hsa-miR-548c-3p |
CLIP-seq |
|
MIRT1073705 |
hsa-miR-641 |
CLIP-seq |
|
MIRT1073707 |
hsa-miR-92a |
CLIP-seq |
|
MIRT1073708 |
hsa-miR-92b |
CLIP-seq |
|
MIRT2389488 |
hsa-miR-101 |
CLIP-seq |
|
MIRT2389489 |
hsa-miR-1243 |
CLIP-seq |
|
MIRT2389490 |
hsa-miR-125a-3p |
CLIP-seq |
|
MIRT1073657 |
hsa-miR-1265 |
CLIP-seq |
|
MIRT2389491 |
hsa-miR-1285 |
CLIP-seq |
|
MIRT2389492 |
hsa-miR-130a |
CLIP-seq |
|
MIRT2389493 |
hsa-miR-130b |
CLIP-seq |
|
MIRT2389494 |
hsa-miR-144 |
CLIP-seq |
|
MIRT1073663 |
hsa-miR-208a |
CLIP-seq |
|
MIRT1073664 |
hsa-miR-208b |
CLIP-seq |
|
MIRT2389495 |
hsa-miR-2355-5p |
CLIP-seq |
|
MIRT1073667 |
hsa-miR-25 |
CLIP-seq |
|
MIRT2389496 |
hsa-miR-301a |
CLIP-seq |
|
MIRT2389497 |
hsa-miR-301b |
CLIP-seq |
|
MIRT2389498 |
hsa-miR-3126-3p |
CLIP-seq |
|
MIRT2018201 |
hsa-miR-3140-5p |
CLIP-seq |
|
MIRT2389499 |
hsa-miR-3187-5p |
CLIP-seq |
|
MIRT1073672 |
hsa-miR-32 |
CLIP-seq |
|
MIRT1073673 |
hsa-miR-3617 |
CLIP-seq |
|
MIRT2389500 |
hsa-miR-3622a-3p |
CLIP-seq |
|
MIRT2389501 |
hsa-miR-3622b-3p |
CLIP-seq |
|
MIRT1073674 |
hsa-miR-363 |
CLIP-seq |
|
MIRT2389502 |
hsa-miR-3654 |
CLIP-seq |
|
MIRT1073676 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT2389503 |
hsa-miR-3659 |
CLIP-seq |
|
MIRT2389504 |
hsa-miR-3665 |
CLIP-seq |
|
MIRT2389505 |
hsa-miR-3666 |
CLIP-seq |
|
MIRT1073678 |
hsa-miR-367 |
CLIP-seq |
|
MIRT2389506 |
hsa-miR-4280 |
CLIP-seq |
|
MIRT2389507 |
hsa-miR-4295 |
CLIP-seq |
|
MIRT2389508 |
hsa-miR-4328 |
CLIP-seq |
|
MIRT1073688 |
hsa-miR-4519 |
CLIP-seq |
|
MIRT2389509 |
hsa-miR-454 |
CLIP-seq |
|
MIRT2389510 |
hsa-miR-4658 |
CLIP-seq |
|
MIRT2389511 |
hsa-miR-4704-5p |
CLIP-seq |
|
MIRT2389512 |
hsa-miR-4738-3p |
CLIP-seq |
|
MIRT1073698 |
hsa-miR-499-3p |
CLIP-seq |
|
MIRT1073699 |
hsa-miR-499-5p |
CLIP-seq |
|
MIRT1073700 |
hsa-miR-499a-3p |
CLIP-seq |
|
MIRT2389513 |
hsa-miR-574-5p |
CLIP-seq |
|
MIRT2389514 |
hsa-miR-612 |
CLIP-seq |
|
MIRT1073705 |
hsa-miR-641 |
CLIP-seq |
|
MIRT2389515 |
hsa-miR-657 |
CLIP-seq |
|
MIRT2389516 |
hsa-miR-891b |
CLIP-seq |
|
MIRT1073707 |
hsa-miR-92a |
CLIP-seq |
|
MIRT1073708 |
hsa-miR-92b |
CLIP-seq |
|
MIRT2553614 |
hsa-miR-297 |
CLIP-seq |
|
MIRT2553615 |
hsa-miR-3149 |
CLIP-seq |
|
MIRT1073685 |
hsa-miR-4468 |
CLIP-seq |
|
MIRT1073691 |
hsa-miR-4678 |
CLIP-seq |
|
MIRT2389512 |
hsa-miR-4738-3p |
CLIP-seq |
|
MIRT2553616 |
hsa-miR-586 |
CLIP-seq |
|
MIRT2553617 |
hsa-miR-643 |
CLIP-seq |
|
|
Transcription factors
|
Transcription factor |
Regulation |
Reference |
POU5F1 |
Activation |
22311737 |
SOX2 |
Activation |
22311737 |
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
P23229 |
Protein name |
Integrin alpha-6 (CD49 antigen-like family member F) (VLA-6) (CD antigen CD49f) [Cleaved into: Integrin alpha-6 heavy chain; Integrin alpha-6 light chain; Processed integrin alpha-6 (Alpha6p)] |
Protein function |
Integrin alpha-6/beta-1 (ITGA6:ITGB1) is a receptor for laminin on platelets (By similarity). Integrin alpha-6/beta-1 (ITGA6:ITGB1) is present in oocytes and is involved in sperm-egg fusion (By similarity). Integrin alpha-6/beta-4 (ITGA6:ITGB4) |
PDB |
7CEB
,
7CEC
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF01839 |
FG-GAP |
355 → 393 |
FG-GAP repeat |
Repeat |
PF08441 |
Integrin_alpha2 |
503 → 978 |
Integrin alpha |
Family |
|
Sequence |
|
Sequence length |
1130 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
|
|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anonychia |
ANONYCHIA |
rs74315420, rs74315421, rs74315422, rs74315423, rs387907026, rs387907027, rs387907028, rs780261665, rs775644973, rs370554150 |
|
Aplasia cutis congenita |
Aplasia Cutis Congenita |
rs587777706 |
|
Arthrogryposis multiplex congenita |
Arthrogryposis |
rs1586285494, rs80358233, rs137853305, rs1559154278, rs398124167, rs398124172, rs587780399, rs786204576, rs786204430, rs769345284, rs749355583, rs793888524, rs793888525, rs878854368, rs555445835, rs758105619, rs886041851, rs794727136, rs755239192, rs760715690, rs773952935, rs112610938, rs1057516676, rs1057516996, rs780022652, rs1057517399, rs1057517360, rs1057518353, rs1057517977, rs1064796311, rs779232987, rs775997446, rs1064797093, rs1064797094, rs1064797095, rs755500591, rs754272530, rs758247804, rs200731870, rs747179265, rs1553740233, rs776569219, rs375628303, rs775631800, rs781667543, rs1553548666, rs928945364, rs763364977, rs1458048713, rs1553883480, rs1472403020, rs1336053002, rs202048855, rs1197561990, rs755531536, rs1554112524, rs762133567, rs1553555882, rs934111355, rs1255744452, rs1366269616, rs1555734932, rs1553548207, rs752582527, rs1257495033, rs113525641, rs755863625, rs374929094, rs539819851, rs1366853918, rs1218073575, rs1553537512, rs1553552384, rs747564597, rs776059611, rs756726488, rs1357811155, rs1553939600, rs772009599, rs1255445731, rs1011425121, rs1553561697, rs1553551748, rs1553552413, rs760935667, rs1553603400, rs1302373559, rs1389892619, rs1553710982, rs757157808, rs1180339426, rs761964375, rs1235589246, rs1443738549, rs1553934586, rs1553934597, rs1553603437, rs749452641, rs1553904694, rs754369875, rs112517981, rs774495973, rs1428597732, rs746999970, rs113091511, rs1553603958, rs1553469502, rs770797137, rs1553608621, rs1159756073, rs776167256, rs778593702, rs1553601066, rs1553689774, rs760768475, rs1559296376, rs201636991, rs1559039815, rs748922882, rs772366030, rs1207534366, rs1259297878, rs762780413, rs1559360386, rs1559940778, rs760200697, rs1344099907, rs750900690, rs1559168230, rs746177326, rs761067911, rs1323364980, rs537560378, rs1319778592, rs1340063197, rs1577833924, rs750585238, rs1600470099, rs1575714905, rs1576203853, rs779909544, rs760124743, rs2096362304, rs1212374733, rs1490309743, rs767709270, rs1374971806, rs2096491549, rs2097886912, rs2099021112, rs2097758221, rs1474341248, rs925947627 |
|
Epidermolysis bullosa |
Epidermolysis bullosa with pyloric atresia |
rs137852757, rs80356682, rs80356680, rs786205094, rs121912482, rs786205095, rs587776813, rs121912487, rs587776814, rs1558092501, rs80356683, rs118203899, rs118203900, rs1558095794, rs118203901, rs1558088792, rs121912466, rs2147483647, rs746056280, rs121912832, rs121912833, rs121912834, rs121912836, rs121912837, rs759990189, rs121912839, rs121912844, rs121912845, rs1575495784, rs121912848, rs121912849, rs121912851, rs121912852, rs121912853, rs121912854, rs121912855, rs121912769, rs1564673127, rs121912770, rs753898533, rs121912771, rs1589562891, rs2134563935, rs2134581672, rs121912772, rs121912773, rs121912774, rs121912856, rs201551805, rs769967565, rs786204774, rs797045084, rs886039330, rs886039412, rs1553277702, rs886041187, rs368007918, rs886041186, rs766902987, rs886041555, rs752657203, rs757415879, rs886058642, rs752317971, rs201307156, rs1057517096, rs774133746, rs772421306, rs758886532, rs144023803, rs1057517723, rs760063197, rs916512411, rs772381373, rs768128088, rs374718902, rs762162799, rs1064793916, rs780623622, rs747522386, rs1064793760, rs775196743, rs1131691385, rs201940939, rs200972872, rs139318843, rs1368134215, rs1203706188, rs772038362, rs1553281335, rs1181742615, rs1553853022, rs1553612928, rs1055680335, rs1057517023, rs760094345, rs1560241522, rs199527325, rs751535193, rs767539005, rs775244527, rs769808745, rs1032335328, rs1478395810, rs777672897, rs1575466699, rs776841521, rs1589572214, rs761388039, rs769294243, rs761927109, rs754621187 |
9185503, 26817667 |
Junctional epidermolysis bullosa with pyloric atresia |
Junctional epidermolysis bullosa with pyloric atresia |
rs794726676, rs121912461, rs121912462, rs80338755, rs121912463, rs147222357, rs121912464, rs121912465, rs1434530468, rs121912467, rs121912468, rs758551913, rs879255260, rs886041205, rs752657203, rs772142634, rs551348450, rs545619665 |
|
Renal dysplasia |
Renal Cell Dysplasia, Renal dysplasia |
rs387907123 |
|
Rheumatoid arthritis |
Rheumatoid Arthritis |
rs3766379, rs3792876, rs2071592, rs3087456, rs587776843, rs1566328963, rs2240340, rs1557787212 |
17379860 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Accessory kidney |
Accessory kidney |
|
|
Congenital pyloric atresia |
Congenital pyloric atresia |
|
|
Cystitis |
Cystitis |
|
|
Dental enamel hypoplasia |
Dental Enamel Hypoplasia |
|
|
Ectropion |
Ectropion |
|
|
Esophageal atresia |
Esophageal Atresia |
|
|
Hydronephrosis |
Hydronephrosis |
|
|
Intestinal atresia |
Intestinal Atresia |
|
|
Junctional split |
Junctional split |
|
|
Nail diseases |
NAIL DISORDER, NONSYNDROMIC CONGENITAL, 9 |
|
|
Nail dysplasia |
Nail dysplasia |
|
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Nail dystrophy |
Dystrophia unguium |
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Pterygium |
Pterygium |
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Ureterocele |
Ureterocele |
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|
Urogenital abnormalities |
Urogenital Abnormalities |
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