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GDF2 (growth differentiation factor 2)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2658
Gene nameGene Name - the full gene name approved by the HGNC.
Growth differentiation factor 2
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
GDF2
SynonymsGene synonyms aliases
BMP-9, BMP9, HHT5
ChromosomeChromosome number
10
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q11.22
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs35129734 C>A,T Pathogenic, likely-benign Missense variant, coding sequence variant, synonymous variant
rs139568056 G>A Conflicting-interpretations-of-pathogenicity Synonymous variant, terminator codon variant
rs199804679 C>G,T Pathogenic Coding sequence variant, missense variant
rs200330818 G>A,T Uncertain-significance, pathogenic Coding sequence variant, missense variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1015721 hsa-miR-149 CLIP-seq
MIRT1015722 hsa-miR-24 CLIP-seq
MIRT1015723 hsa-miR-3064-5p CLIP-seq
MIRT1015724 hsa-miR-4284 CLIP-seq
MIRT1015725 hsa-miR-4794 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001503 Process Ossification TAS 20406889
GO:0001525 Process Angiogenesis IMP 23972370
GO:0001569 Process Branching involved in blood vessel morphogenesis IDA 20406889
GO:0001570 Process Vasculogenesis IEA
GO:0001649 Process Osteoblast differentiation IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9UK05
Protein name Growth/differentiation factor 2 (GDF-2) (Bone morphogenetic protein 9) (BMP-9)
Protein function Potent circulating inhibitor of angiogenesis. Signals through the type I activin receptor ACVRL1 but not other Alks. Signaling through SMAD1 in endothelial cells requires TGF-beta coreceptor endoglin/ENG. {ECO:0000269|PubMed:18309101, ECO:000026
PDB 1ZKZ , 4FAO , 4MPL , 4YCG , 4YCI , 5HZW , 5I05 , 9DPM , 9DPN , 9DPO , 9DPP , 9DPQ , 9DPR , 9DPS , 9DPT , 9DPU , 9DPV , 9DPW , 9DPX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00688 TGFb_propeptide
56 257
TGF-beta propeptide
Family
PF00019 TGF_beta
326 428
Transforming growth factor beta like domain
Domain
Sequence
Sequence length 429
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Cytokine-cytokine receptor interaction   Signaling by BMP
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Anemia Iron-Refractory Iron Deficiency Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505
Cholelithiasis Cholelithiasis rs121918440, rs72552778, rs387906528, rs759202962, rs377160065, rs1051861187, rs757693457, rs752563752
Hereditary hemorrhagic telangiectasia Hereditary hemorrhagic telangiectasia rs121918400, rs2131875838, rs1564457752, rs121918402, rs373842615, rs730880096, rs863223539, rs863223538, rs863223541, rs863223543, rs863223542, rs863223536, rs863223540, rs863223537, rs863223534, rs863223532, rs863223414, rs863223413, rs863223406, rs864622666, rs878853657, rs878853659, rs878853658, rs886039505, rs886039506, rs886041325, rs886041326, rs886042916, rs1057517944, rs1057521648, rs1060501421, rs1060501413, rs1060501422, rs1060501419, rs1060501410, rs1060501412, rs1554810257, rs1060501414, rs1060501408, rs1064792934, rs1060501417, rs1060501418, rs1064794218, rs1064793889, rs1064793734, rs1064794219, rs1064794220, rs1085307433, rs1085307409, rs1085307429, rs1131691422, rs1131691444, rs1131691931, rs1131691686, rs1554810051, rs1554810378, rs1554809228, rs1554809268, rs1554809450, rs1554810232, rs1554810490, rs1554813788, rs1554810936, rs1197761705, rs111471193, rs1555152440, rs1555152966, rs1555153354, rs1554809361, rs761353511, rs1554812283, rs1554813783, rs1554809448, rs1554809446, rs1554809455, rs1554809516, rs1554810215, rs1554810928, rs1554810177, rs1554810510, rs1554810921, rs1554812253, rs267606783, rs1554809229, rs763475207, rs1554810041, rs1554810272, rs1554809513, rs1329127701, rs1060501420, rs1554809106, rs1554810405, rs1554809355, rs1452543778, rs1554809348, rs1554809363, rs1554810932, rs1554809331, rs774429348, rs1554810174, rs1564452075, rs1564452685, rs1564453619, rs1564455554, rs1564455604, rs12042, rs369596004, rs1564453019, rs1564455715, rs1564456374, rs773334730, rs1564466414, rs1564452747, rs1564453538, rs1440769928, rs1252348200, rs1564452667, rs1564452759, rs1564455970, rs1434169817, rs1335718486, rs1564462765, rs1588574749, rs997074986, rs1588576923, rs1588577016, rs1588580782, rs1588581338, rs1588581785, rs1588581867, rs1588581880, rs1588581902, rs1588581961, rs1588582695, rs1588582870, rs1588582962, rs1588583488, rs1588583530, rs1588583640, rs1588585880, rs1588585941, rs1588585997, rs1588596879, rs1588604603, rs1592223399, rs1592224087, rs1588580932, rs1588582594, rs1588582860, rs1588596830, rs1830375228, rs1830384447, rs1830384910, rs1830385077, rs1830432509, rs1830432773, rs1830579035, rs1243079862, rs1830599875, rs1830620321, rs1830620889, rs1830345043, rs113930974 23972370, 26801773
Liver failure Liver Failure rs118203990, rs118203991, rs118203992, rs387907022, rs201861847, rs796065037, rs759315662, rs368196005, rs796052121, rs369437593, rs367683258, rs766314948, rs368085185, rs770446752, rs753039116, rs776797592, rs1490906786, rs1562849964, rs759960319, rs776597537, rs375350359, rs1573008071, rs1601977105, rs1174791046, rs1019313682
Unknown
Disease name Disease term dbSNP ID References
Cholecystitis Cholecystitis
Cirrhosis Cirrhosis rs119465999, rs144369314, rs8056684, rs112053857, rs75998507
Congestive heart failure Congestive heart failure rs2301610, rs3833910, rs12301951, rs201674674, rs186741807, rs150140412, rs786205727, rs757840030, rs552050895, rs759465783, rs201978086, rs572757800, rs1572143354, rs749160569
Conjunctival telangiectasis Conjunctival telangiectasis

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