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SLC17A5 (solute carrier family 17 member 5)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
26503
Gene nameGene Name - the full gene name approved by the HGNC.
Solute carrier family 17 member 5
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
SLC17A5
SynonymsGene synonyms aliases
AST, ISSD, NSD, SD, SIALIN, SIASD, SLD, VEAT
ChromosomeChromosome number
6
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q13
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a membrane transporter that exports free sialic acids that have been cleaved off of cell surface lipids and proteins from lysosomes. Mutations in this gene cause sialic acid storage diseases, including infantile sialic acid storage disor
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs74360232 C>T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs80338794 G>A Pathogenic Coding sequence variant, missense variant
rs80338795 T>A,C Pathogenic-likely-pathogenic, pathogenic Coding sequence variant, missense variant, stop gained
rs119491109 T>C Pathogenic Missense variant, coding sequence variant
rs119491110 G>A,C Pathogenic Missense variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002576 hsa-miR-124-3p Microarray 15685193
MIRT018617 hsa-miR-335-5p Microarray 18185580
MIRT002576 hsa-miR-124-3p Microarray 18668037
MIRT002576 hsa-miR-124-3p Microarray 15685193
MIRT027706 hsa-miR-98-5p Microarray 19088304
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005351 Function Carbohydrate:proton symporter activity TAS 10581036
GO:0005764 Component Lysosome IBA 21873635
GO:0005765 Component Lysosomal membrane HDA 17897319
GO:0005765 Component Lysosomal membrane IDA 3961501
GO:0005765 Component Lysosomal membrane TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9NRA2
Protein name Sialin (H(+)/nitrate cotransporter) (H(+)/sialic acid cotransporter) (AST) (Membrane glycoprotein HP59) (Solute carrier family 17 member 5) (Vesicular excitatory amino acid transporter) (VEAT)
Protein function Multifunctional anion transporter that operates via two distinct transport mechanisms, namely proton-coupled anion cotransport and membrane potential-dependent anion transport (PubMed:15510212, PubMed:21781115, PubMed:22778404, PubMed:23889254).
PDB 8DWI , 8U3D , 8U3E , 8U3F , 8U3G , 8U3H , 9AYB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07690 MFS_1
46 441
Major Facilitator Superfamily
Family
Sequence
Sequence length 495
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Lysosome   Sialic acid metabolism
Organic anion transporters
Defective SLC17A5 causes Salla disease (SD) and ISSD
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Hydrocephalus Hydrocephalus rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546
Hydrops fetalis Hydrops Fetalis rs28935477, rs1131691986 10546100
Leukodystrophy Leukodystrophy rs74315475, rs72466451, rs267608671, rs181087667, rs267608682, rs267608674, rs587778271, rs148932047, rs886037931, rs368905417, rs768180196, rs1558211070, rs1558209947, rs1558210191, rs1280845604, rs1382083552, rs1576101665, rs1576080546, rs1576074651, rs1367958450, rs932183417
Unknown
Disease name Disease term dbSNP ID References
Cerebral atrophy Cerebral atrophy
Congenital epicanthus Congenital Epicanthus
Congestive heart failure Congestive heart failure rs2301610, rs3833910, rs12301951, rs201674674, rs186741807, rs150140412, rs786205727, rs757840030, rs552050895, rs759465783, rs201978086, rs572757800, rs1572143354, rs749160569
Conjugated hyperbilirubinemia Conjugated hyperbilirubinemia

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