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PHF19 (PHD finger protein 19)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
26147
Gene nameGene Name - the full gene name approved by the HGNC.
PHD finger protein 19
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
PHF19
SynonymsGene synonyms aliases
MTF2L1, PCL3, TDRD19B
ChromosomeChromosome number
9
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9q33.2
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002687 hsa-miR-124-3p Microarray 15685193
MIRT016585 hsa-miR-193b-3p Microarray 20304954
MIRT002687 hsa-miR-124-3p Microarray 15685193
MIRT002687 hsa-miR-124-3p Microarray 18668037
MIRT025582 hsa-miR-34a-5p Sequencing 20371350
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003677 Function DNA binding IBA 21873635
GO:0003682 Function Chromatin binding IBA 21873635
GO:0005515 Function Protein binding IPI 23104054, 23160351, 23455924, 32296183, 32814053
GO:0005634 Component Nucleus IBA 21873635
GO:0005654 Component Nucleoplasm TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q5T6S3
Protein name PHD finger protein 19 (Polycomb-like protein 3) (hPCL3)
Protein function Polycomb group (PcG) protein that specifically binds histone H3 trimethylated at 'Lys-36' (H3K36me3) and recruits the PRC2 complex, thus enhancing PRC2 H3K27me3 methylation activity (PubMed:15563832, PubMed:18691976, PubMed:23104054, PubMed:2316
PDB 2E5Q , 4BD3 , 6NQ3 , 6WAU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18104 Tudor_2
43 78
Jumonji domain-containing protein 2A Tudor domain
Domain
PF00628 PHD
98 151
PHD-finger
Domain
PF14061 Mtf2_C
531 578
Polycomb-like MTF2 factor 2
Domain
Sequence
MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI
KRVSSSKQSCLVTFEDNS
KYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG
LGYHQQCHIPIAGSADQPLLTPWFCRRCIFA
LAVRKGGALKKGAIARTLQAVKMVLSYQP
EELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQWFHEACTQCLNEPMMFGDRFYL
FFCSVCNQGPEYIERLPLRWVDVVHLALYNLGVQSKKKYFDFEEILAFVNHHWELLQLGK
LTSTPVTDRGPHLLNALNSYKSRFLCGKEIKKKKCIFRLRIRVPPNPPGKLLPDKGLLPN
ENSASSELRKRGKSKPGLLPHEFQQQKRRVYRRKRSKFLLEDAIPSSDFTSAWSTNHHLA
SIFDFTLDEIQSLKSASSGQTFFSDVDSTDAASTSGSASTSLSYDSRWTVGSRKRKLAAK
AYMPLRAKRWAAELDGRCPSDSSAEGASVPERPDEGIDSHTFESISEDDSSLSHLKSSIT
NYFGAAGRLACGEKYQVLARRVTPEGKVQYLVEWEGTT
PY
Sequence length 580
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Polycomb repressive complex   PRC2 methylates histones and DNA
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Asthma Asthma rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283 21907864
Autoimmune diseases Autoimmune Diseases rs41285370, rs869025224 21383967
Rheumatoid arthritis Rheumatoid Arthritis rs3766379, rs3792876, rs2071592, rs3087456, rs587776843, rs1566328963, rs2240340, rs1557787212 24782177, 17804836, 24390342, 30423114, 19503088
Unknown
Disease name Disease term dbSNP ID References
Eczema Eczema 30595370
Immune system diseases Immune System Diseases 21383967

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