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HARS2 (histidyl-tRNA synthetase 2, mitochondrial)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
23438
Gene nameGene Name - the full gene name approved by the HGNC.
Histidyl-tRNA synthetase 2, mitochondrial
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
HARS2
SynonymsGene synonyms aliases
HARSL, HARSR, HO3, HisRS, PRLTS2
ChromosomeChromosome number
5
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q31.3
SummarySummary of gene provided in NCBI Entrez Gene.
Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids. The protein encoded by this gene is an enzyme belonging to the class II family of aminoacyl-tRNA synthetases. Functioning in the synthesis of histidyl-tran
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61736946 G>C Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs140540222 C>T Uncertain-significance, likely-pathogenic Missense variant, coding sequence variant, intron variant, 5 prime UTR variant
rs200089613 G>A,T Likely-benign, likely-pathogenic Missense variant, coding sequence variant
rs376177973 G>A,T Likely-pathogenic Coding sequence variant, missense variant
rs397515410 C>G Pathogenic-likely-pathogenic Coding sequence variant, missense variant, 5 prime UTR variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001459 hsa-miR-16-5p pSILAC 18668040
MIRT001459 hsa-miR-16-5p Proteomics;Other 18668040
MIRT042251 hsa-miR-484 CLASH 23622248
MIRT1040804 hsa-miR-1225-5p CLIP-seq
MIRT1040805 hsa-miR-1276 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding HDA 22681889
GO:0004821 Function Histidine-tRNA ligase activity IBA 21873635
GO:0004821 Function Histidine-tRNA ligase activity IDA 21464306
GO:0004821 Function Histidine-tRNA ligase activity NAS 7755634
GO:0004821 Function Histidine-tRNA ligase activity TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P49590
Protein name Histidine--tRNA ligase, mitochondrial (EC 6.1.1.21) (Histidine--tRNA ligase-like) (Histidyl-tRNA synthetase) (HisRS)
Protein function Mitochondrial aminoacyl-tRNA synthetase that catalyzes the ATP-dependent ligation of histidine to the 3'-end of its cognate tRNA, via the formation of an aminoacyl-adenylate intermediate (His-AMP).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13393 tRNA-synt_His
62 390
Histidyl-tRNA synthetase
Domain
PF03129 HGTP_anticodon
411 502
Anticodon binding domain
Domain
Sequence
Sequence length 506
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Aminoacyl-tRNA biosynthesis   Mitochondrial tRNA aminoacylation
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359, rs180177151, rs180177154, rs180177153, rs35689081, rs35887622, rs80338944, rs104894396, rs104894398, rs80338947, rs80338948, rs80338942, rs104894402, rs104894403, rs80338945, rs28931594, rs80338940, rs80338941, rs80356590, rs80338950, rs387906706, rs387906707, rs387906708, rs398122848, rs387907016, rs587776894, rs387907088, rs397515411, rs370965183, rs398122930, rs199897298, rs111033187, rs111033448, rs199606180, rs111033284, rs397516413, rs111033305, rs111033220, rs111033256, rs111033297, rs111033253, rs104894408, rs111033295, rs397516874, rs76434661, rs111033335, rs397517323, rs111033247, rs367928692, rs374793617, rs143939430, rs397515605, rs80338939, rs200656442, rs779748859, rs587781261, rs587781262, rs143343083, rs200147906, rs730880338, rs797044491, rs146281367, rs756484720, rs869025593, rs201306709, rs540895576, rs777777359, rs879255246, rs1554358720, rs142498437, rs377145777, rs1057517519, rs779077039, rs952741388, rs1060499797, rs764139009, rs1060499590, rs1064794012, rs1064797115, rs756790858, rs775633137, rs1554952443, rs1554952193, rs782063761, rs1199012623, rs756147087, rs1555648043, rs1555661490, rs1553196233, rs781546107, rs111033190, rs775428246, rs782539587, rs537227442, rs148695069, rs1554835827, rs953422571, rs1554834186, rs1554834161, rs1554835103, rs1554577339, rs1554577402, rs768471577, rs782279338, rs781951909, rs998045226, rs375759781, rs755804651, rs1557458426, rs767797828, rs538027448, rs1559366084, rs367688416, rs1558480402, rs1558490542, rs1559870857, rs1560690591, rs1561299289, rs1562817224, rs1562817529, rs1562822565, rs1562835391, rs1564113368, rs1564554255, rs773851192, rs1564555240, rs761261855, rs1564805114, rs1565522273, rs1565127413, rs781790246, rs1565430886, rs1565469959, rs746667217, rs1565819402, rs1565855932, rs150529554, rs1567939793, rs201866631, rs754472294, rs1559372512, rs1558464965, rs1558488902, rs775062249, rs1226171550, rs1561590396, rs765574676, rs762876554, rs757327146, rs1564949059, rs1565519673, rs368050948, rs1565541888, rs781989117, rs1565402473, rs750358148, rs1386887007, rs1209665716, rs1567641234, rs1237955948, rs1569042782, rs752672077, rs146689036, rs1560070780, rs149712664, rs1564556995, rs762226905, rs773573968, rs1568528171, rs1198256157, rs377267777, rs370564476, rs1577876794, rs747787770, rs759432278, rs1043716893, rs1581138934, rs2033773650, rs1421964916, rs771766431, rs780917129, rs1895773215, rs1895769400, rs761543680, rs1565920060
Perrault syndrome PERRAULT SYNDROME 2, Perrault syndrome rs397515410, rs398123033, rs398123034, rs398123035, rs199589947, rs398123036, rs398123037, rs587777443, rs786205560, rs786205574, rs775766910, rs864309643, rs376177973, rs201392711, rs1131692170, rs776171893, rs774649299, rs766199971, rs1555719766, rs1559484149, rs1562047621, rs754069818, rs778499309, rs1169927428, rs1038744864, rs536853368, rs770440975, rs1575292827, rs1599193093, rs2091852209 21464306, 27650058, 28263850, 31449985
Unknown
Disease name Disease term dbSNP ID References
Gonadal dysgenesis Gonadal dysgenesis XX type deafness 21464306

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