Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
2312 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Filaggrin |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
FLG |
SynonymsGene synonyms aliases
|
ATOD2, FLG-1, FLG1 |
ChromosomeChromosome number
|
1 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
1q21.3 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
The protein encoded by this gene is an intermediate filament-associated protein that aggregates keratin intermediate filaments in mammalian epidermis. It is initially synthesized as a polyprotein precursor, profilaggrin (consisting of multiple filaggrin u |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs3120649 |
G>A,C,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs121909626 |
G>C,T |
Pathogenic, risk-factor |
Stop gained, coding sequence variant |
rs138726443 |
G>A,C,T |
Pathogenic |
Stop gained, missense variant, synonymous variant, coding sequence variant |
rs140980397 |
G>A,C,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs141784184 |
G>A,T |
Likely-pathogenic |
Coding sequence variant, stop gained, missense variant |
rs146466242 |
T>A,C |
Likely-pathogenic, uncertain-significance |
Stop gained, missense variant, coding sequence variant |
rs146686141 |
G>A,C,T |
Pathogenic |
Stop gained, missense variant, coding sequence variant, synonymous variant |
rs147145234 |
G>T |
Pathogenic |
Stop gained, coding sequence variant |
rs148606936 |
G>A,C,T |
Pathogenic |
Stop gained, missense variant, coding sequence variant |
rs149105551 |
G>A,C,T |
Pathogenic |
Stop gained, missense variant, coding sequence variant, synonymous variant |
rs149484917 |
G>C,T |
Pathogenic |
Stop gained, coding sequence variant |
rs150597413 |
G>A,C,T |
Likely-pathogenic, pathogenic |
Stop gained, missense variant, coding sequence variant |
rs180768115 |
G>C,T |
Likely-pathogenic |
Stop gained, coding sequence variant |
rs199895224 |
C>A,G |
Pathogenic |
Stop gained, missense variant, coding sequence variant |
rs200002200 |
G>A |
Pathogenic |
Stop gained, coding sequence variant |
rs201356558 |
G>A,C |
Pathogenic |
Missense variant, coding sequence variant, stop gained |
rs372754256 |
G>C |
Pathogenic |
Coding sequence variant, stop gained |
rs374588791 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant, stop gained |
rs397507563 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs528722713 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs528961889 |
G>A,T |
Pathogenic |
Synonymous variant, coding sequence variant, stop gained |
rs535289422 |
G>A,C |
Pathogenic |
Missense variant, stop gained, coding sequence variant |
rs542799026 |
G>C |
Pathogenic |
Coding sequence variant, stop gained |
rs546871592 |
G>A |
Likely-pathogenic |
Coding sequence variant, stop gained |
rs564628353 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs567795279 |
T>A |
Pathogenic |
Coding sequence variant, stop gained |
rs573388805 |
G>A,C |
Pathogenic |
Stop gained, missense variant, coding sequence variant |
rs578184315 |
GGATGATG>- |
Pathogenic |
Stop gained, coding sequence variant |
rs747301529 |
C>A |
Pathogenic |
Stop gained, coding sequence variant |
rs748135905 |
C>A,T |
Pathogenic |
Stop gained, coding sequence variant, missense variant |
rs749083759 |
G>A,C |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs754328064 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs754727774 |
G>A,C,T |
Pathogenic |
Synonymous variant, coding sequence variant, stop gained, missense variant |
rs754812742 |
G>A,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs755823797 |
GACT>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs756998312 |
G>A,T |
Pathogenic |
Missense variant, coding sequence variant, stop gained |
rs757726987 |
T>A |
Pathogenic |
Coding sequence variant, stop gained |
rs760831749 |
GT>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs761212672 |
G>T |
Pathogenic |
Coding sequence variant, stop gained |
rs761519693 |
GACT>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs764094665 |
T>A |
Pathogenic |
Stop gained, coding sequence variant |
rs769826402 |
TCTG>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs771027814 |
TG>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs774129089 |
G>C |
Pathogenic |
Coding sequence variant, stop gained |
rs774362740 |
G>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs775716153 |
->TGAGT |
Pathogenic |
Coding sequence variant, frameshift variant |
rs777848510 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs778545248 |
C>A,G |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs781161516 |
->G |
Pathogenic |
Coding sequence variant, frameshift variant |
rs972579811 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1057517973 |
CT>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1057518212 |
G>C,T |
Pathogenic |
Stop gained, coding sequence variant |
rs1064793675 |
G>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1064795983 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1064796105 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1203718709 |
G>C |
Pathogenic |
Stop gained, coding sequence variant |
rs1246063885 |
T>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1370544496 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1388479165 |
G>C,T |
Pathogenic |
Stop gained, coding sequence variant |
rs1423603720 |
G>A |
Pathogenic |
Stop gained, coding sequence variant |
rs1425411066 |
G>C,T |
Pathogenic |
Stop gained, coding sequence variant |
rs1553211362 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1553213136 |
A>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1570893617 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1570897758 |
T>- |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
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miRNAmiRNA information provided by mirtarbase database.
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|
Transcription factors
|
Transcription factor |
Regulation |
Reference |
HOPX |
Activation |
21256618 |
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P20930 |
Protein name |
Filaggrin |
Protein function |
Aggregates keratin intermediate filaments and promotes disulfide-bond formation among the intermediate filaments during terminal differentiation of mammalian epidermis. |
PDB |
4PCW
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF01023 |
S_100 |
4 → 46 |
S-100/ICaBP type calcium binding domain |
Domain |
PF03516 |
Filaggrin |
257 → 306 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
373 → 428 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
574 → 630 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
697 → 753 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
899 → 955 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1022 → 1077 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1223 → 1279 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1346 → 1401 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1547 → 1603 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1670 → 1725 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1871 → 1927 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
1994 → 2050 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2196 → 2252 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2319 → 2374 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2520 → 2576 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2643 → 2698 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2844 → 2900 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
2967 → 3022 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
3168 → 3224 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
3291 → 3346 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
3492 → 3548 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
3615 → 3670 |
Filaggrin |
Repeat |
PF03516 |
Filaggrin |
3816 → 3872 |
Filaggrin |
Repeat |
|
Sequence |
|
Sequence length |
4061 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Asthma |
Asthma, Childhood asthma |
rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283 |
31619474, 30929738, 31036433, 30552067, 31036433 |
Autism |
Autistic Disorder |
rs121964908, rs121912597, rs2710102, rs7794745, rs142990298, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699, rs1553510219, rs1684182454, rs1559060428, rs1553510677, rs1576352885, rs1574152522, rs1574152672, rs1696658542, rs1751123722, rs1750373491, rs1751075634 |
16444271 |
Dermatitis |
Dermatitis, Dermatitis, Atopic, Contact Dermatitis, Dermatitis, Atopic, 2, Inflammatory dermatosis |
rs61816761, rs150597413, rs138726443, rs201356558, rs149484917, rs372754256, rs747301529, rs567795279, rs745915174 |
31330126, 16550169, 23348739, 17030239, 19349982, 16815158, 16444271, 23042114, 24061166, 25724174, 16444271, 17030239, 16444271, 16815158, 16550169 |
Developmental delay |
Global developmental delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
|
Ichthyosis |
Ichthyoses |
rs199766569, rs587776996, rs587777262, rs863223405, rs370031870, rs1569044747, rs200806519 |
|
Ichthyosis vulgaris |
Ichthyosis Vulgaris, NON RARE IN EUROPE: Autosomal dominant ichthyosis vulgaris |
rs61816761, rs121909626, rs150597413, rs397507563, rs138726443, rs797045090, rs147145234, rs761212672, rs535289422, rs754812742, rs201356558, rs760831749, rs374588791, rs144419479, rs200002200, rs142991475, rs148606936, rs114733570, rs149484917, rs774362740, rs777181377, rs528722713, rs1060499587, rs578184315, rs140980397, rs200519781, rs749083759, rs761519693, rs183942200, rs146686141, rs746683647, rs372754256, rs1214424848, rs542799026, rs567795279, rs180768115, rs1570897758, rs769826402, rs564628353, rs775716153, rs745915174, rs1570913142, rs143418984 |
17030239, 17417636, 19733298, 18200065, 16550169, 21923666, 27279822, 24061166, 22403702, 19874431, 19501237, 17291859, 16815158, 23947670, 21514438, 22220561, 21428977, 27363669, 18325573, 16444271, 20573035, 19538357, 19839980 |
Myopia |
Myopia |
rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805, rs782555528, rs1554862601, rs1586620121, rs1387950081, rs2051026773, rs1422332023 |
|
Nystagmus |
Nystagmus |
rs137852207, rs137852208, rs1928435502, rs137852209, rs137852210, rs1929191668, rs137852211, rs137852212, rs2124209414, rs387906720, rs387906721, rs1602791884, rs786205896 |
|
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Cerebellar hypoplasia |
Cerebellar Hypoplasia |
|
|
Cutis marmorata |
Cutis marmorata |
|
|
Dysmorphic features |
Dysmorphic features |
|
16444271, 22542183, 17417636, 24267886, 21173567, 20790920 |
Eczema |
Eczema, Eczema, Infantile |
|
30595370, 17417636, 16444271, 16550169, 24061166, 23348739, 19349982, 23042114 |
Hypospadias |
Hypospadias |
|
|
Movement disorders |
Movement Disorders |
|
16444271, 20790920, 22542183, 24267886, 17417636, 21173567 |
Osteopenia |
Osteopenia |
|
|
Respiratory tract diseases |
Respiratory Tract Diseases |
|
30595370 |
|
|
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