F9 (coagulation factor IX)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
2158 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Coagulation factor IX |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
F9 |
SynonymsGene synonyms aliases
|
F9 p22, FIX, HEMB, P19, PTC, THPH8 |
ChromosomeChromosome number
|
X |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
Xq27.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes vitamin K-dependent coagulation factor IX that circulates in the blood as an inactive zymogen. This factor is converted to an active form by factor XIa, which excises the activation peptide and thus generates a heavy chain and a light ch |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs1801202 |
C>T |
Benign, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, missense variant |
rs137852223 |
C>G,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs137852224 |
T>C |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs137852226 |
A>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852227 |
C>T |
Pathogenic |
Coding sequence variant, stop gained |
rs137852228 |
G>A |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852229 |
A>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852230 |
A>G |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852231 |
A>C |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852232 |
C>G |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852233 |
G>A |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852234 |
A>G |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852235 |
G>C |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852236 |
A>G,T |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852237 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852238 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852239 |
C>T |
Pathogenic |
Coding sequence variant, stop gained |
rs137852240 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852241 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852243 |
G>A,C,T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852244 |
C>T |
Pathogenic |
Coding sequence variant, stop gained |
rs137852245 |
A>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852246 |
T>G |
Pathogenic |
Coding sequence variant, missense variant |
rs137852247 |
G>A |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852248 |
C>A,T |
Pathogenic |
Coding sequence variant, synonymous variant, stop gained |
rs137852249 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852250 |
C>T |
Pathogenic |
Coding sequence variant, stop gained |
rs137852251 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs137852252 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852253 |
G>A,C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852254 |
C>T |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852255 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852256 |
G>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852257 |
G>A |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852258 |
C>G,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs137852259 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852260 |
T>A,C |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852261 |
C>A,T |
Pathogenic |
Coding sequence variant, synonymous variant, stop gained |
rs137852262 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs137852263 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852265 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852266 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852267 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852268 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852269 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852270 |
A>T |
Pathogenic |
Coding sequence variant, stop gained |
rs137852271 |
G>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852272 |
C>T |
Pathogenic |
Coding sequence variant, stop gained, intron variant |
rs137852273 |
G>A,C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852274 |
G>A |
Pathogenic |
Coding sequence variant, intron variant, missense variant |
rs137852275 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs137852276 |
G>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852277 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs137852278 |
G>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852279 |
A>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137852280 |
T>A,G |
Pathogenic, likely-pathogenic |
Coding sequence variant, missense variant |
rs137852281 |
G>C |
Pathogenic |
Coding sequence variant, missense variant |
rs137852283 |
G>C,T |
Pathogenic |
Coding sequence variant, missense variant |
rs144314232 |
G>A |
Likely-pathogenic |
Intron variant, synonymous variant, coding sequence variant |
rs148060786 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant |
rs150190385 |
A>T |
Conflicting-interpretations-of-pathogenicity, likely-benign |
Missense variant, coding sequence variant |
rs267606792 |
G>C |
Pathogenic |
Missense variant, coding sequence variant |
rs387906474 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs387906475 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs387906477 |
G>T |
Pathogenic |
Missense variant, coding sequence variant |
rs387906478 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs387906479 |
G>T |
Pathogenic |
Missense variant, coding sequence variant |
rs387906480 |
T>A |
Pathogenic |
Missense variant, coding sequence variant |
rs387906481 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs387906482 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs398122990 |
A>G |
Pathogenic |
Intron variant |
rs587776735 |
T>C |
Pathogenic |
Splice donor variant |
rs587776736 |
AG>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs749754992 |
A>G |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs753654616 |
A>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs757996262 |
C>T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs762229532 |
C>A,T |
Likely-pathogenic |
Coding sequence variant, synonymous variant, missense variant |
rs1166164399 |
G>A |
Pathogenic |
Genic upstream transcript variant, 5 prime UTR variant, upstream transcript variant |
rs1216516070 |
G>A |
Pathogenic |
Missense variant, coding sequence variant, intron variant |
rs1234002716 |
G>A |
Pathogenic |
Stop gained, coding sequence variant, intron variant |
rs1266788575 |
G>A |
Pathogenic |
Intron variant |
rs1275708479 |
G>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs1317977313 |
A>G |
Pathogenic |
3 prime UTR variant |
rs1351675410 |
G>A |
Pathogenic |
Missense variant, intron variant, coding sequence variant |
rs1385141619 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1434866164 |
G>A,C |
Pathogenic |
Splice acceptor variant |
rs1479241411 |
G>A,T |
Likely-pathogenic |
Stop gained, coding sequence variant, missense variant |
rs1556006174 |
->A |
Likely-pathogenic |
Intron variant, frameshift variant, coding sequence variant |
rs1556008316 |
T>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1556008584 |
T>C |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1556435929 |
T>A |
Likely-pathogenic |
Stop gained, coding sequence variant |
rs1556435940 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1556437035 |
G>A |
Likely-pathogenic |
Intron variant, missense variant, coding sequence variant |
rs1569333062 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1569481966 |
A>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603263374 |
TCA>AT |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1603263376 |
G>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1603263395 |
G>A,C |
Pathogenic |
Coding sequence variant, missense variant |
rs1603263397 |
G>A,T |
Pathogenic, likely-pathogenic |
Splice donor variant |
rs1603263399 |
GTTT>- |
Likely-pathogenic |
Splice donor variant, intron variant |
rs1603263401 |
G>T |
Likely-pathogenic |
Intron variant |
rs1603264205 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs1603264236 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1603264246 |
AC>- |
Pathogenic |
Coding sequence variant, stop gained |
rs1603264299 |
T>G |
Pathogenic |
Coding sequence variant, missense variant |
rs1603264300 |
T>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1603264719 |
T>C |
Pathogenic |
Coding sequence variant, missense variant, intron variant |
rs1603264727 |
A>G |
Pathogenic |
Coding sequence variant, missense variant, intron variant |
rs1603264736 |
GAAAGA>AAAGG |
Pathogenic |
Coding sequence variant, frameshift variant, intron variant |
rs1603265480 |
G>C |
Pathogenic |
Splice acceptor variant, intron variant |
rs1603265481 |
T>C |
Pathogenic |
Coding sequence variant, missense variant, intron variant |
rs1603265487 |
C>T |
Pathogenic |
Coding sequence variant, stop gained, intron variant |
rs1603265500 |
G>A |
Pathogenic |
Coding sequence variant, missense variant, intron variant |
rs1603265504 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant, intron variant |
rs1603265760 |
ATATCAGGTTACTAATTTTTCTTCTATTTTTCTAGTGCCATTTCCATGTGGAAGAGTTTCTGTTTCACAAACTTCTAAGCTCACCCGTGCTGAGACTGTTTTTCCTGATGTGGACTATGTAAATTCTACTGAAGCTGAAACCATTTTGGATAACATCACTCAAAGCACCCAATCATTTAATGACTTCACTCGGGTTGTTGGTGGAGAAGATGCCAAACCAGGTCAATTCCCTTGGCAGGTACTTTATACTGATGG |
Pathogenic |
Coding sequence variant, splice acceptor variant, intron variant, splice donor variant |
rs1603265779 |
G>T |
Pathogenic |
Coding sequence variant, missense variant |
rs1603265827 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1603265830 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1603265832 |
G>A |
Pathogenic |
Splice donor variant |
rs1603267163 |
CACAGGTTGTTTT>- |
Likely-pathogenic |
Coding sequence variant, splice acceptor variant, intron variant |
rs1603267171 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267181 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267194 |
T>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267195 |
G>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267332 |
A>G |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267344 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267362 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267391 |
TTCAGTAC>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1603267393 |
T>C |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267398 |
C>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1603267411 |
T>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1603267412 |
A>G |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1603267420 |
T>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267428 |
->GAGAT |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs1603267443 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267474 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1603267486 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
|
Transcription factors
|
Transcription factor |
Regulation |
Reference |
CEBPA |
Activation |
8075306 |
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
P00740 |
Protein name |
Coagulation factor IX (EC 3.4.21.22) (Christmas factor) (Plasma thromboplastin component) (PTC) [Cleaved into: Coagulation factor IXa light chain; Coagulation factor IXa heavy chain] |
Protein function |
Factor IX is a vitamin K-dependent plasma protein that participates in the intrinsic pathway of blood coagulation by converting factor X to its active form in the presence of Ca(2+) ions, phospholipids, and factor VIIIa. {ECO:0000269|PubMed:1730 |
PDB |
1CFH
,
1CFI
,
1EDM
,
1IXA
,
1MGX
,
1NL0
,
1RFN
,
2WPH
,
2WPI
,
2WPJ
,
2WPK
,
2WPL
,
2WPM
,
3KCG
,
3LC3
,
3LC5
,
4WM0
,
4WMA
,
4WMB
,
4WMI
,
4WMK
,
4WN2
,
4WNH
,
4YZU
,
4Z0K
,
4ZAE
,
5EGM
,
5F84
,
5F85
,
5F86
,
5JB8
,
5JB9
,
5JBA
,
5JBB
,
5JBC
,
5TNO
,
5TNT
,
5VYG
,
6MV4
,
6RFK
,
6X5J
,
6X5L
,
6X5P
,
7AHV
,
8EPC
,
8EPH
,
8EPK
,
8OL9
,
9BVK
,
9BVR
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00594 |
Gla |
52 → 92 |
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain |
Domain |
PF00008 |
EGF |
97 → 127 |
EGF-like domain |
Domain |
PF14670 |
FXa_inhibition |
134 → 170 |
|
Domain |
PF00089 |
Trypsin |
227 → 454 |
Trypsin |
Domain |
|
Sequence |
|
Sequence length |
461 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
|
|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Arthritis |
Degenerative polyarthritis |
rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 |
|
Hemophilia |
Hemophilia B, Hemophilia A |
rs1178811105, rs2147483647, rs137852241, rs137852243, rs1927322453, rs1927322926, rs1166164399 |
3009023, 22639855, 18624698, 26612714, 1902289, 11122099, 29993188, 3401602, 12604421, 9452115, 9169594, 1346975, 2592373, 25470321, 1615485, 8680410, 12588353, 9590153, 3286010, 2472424, 1958666, 19699296, 25251685, 3416069, 2372509, 1864609, 2753873, 26964564, 28752769, 8257988, 2388855, 2773937, 2738071, 3790720, 23093250, 8199596, 9639513, 9222764, 9600455, 16643212, 10698280, 7062952, 2066105, 8076946, 25330515, 2198809, 7981722, 2714791, 22544209, 2339358, 2162822, 30210749, 27824213, 2775660, 2713493, 8295821, 10094553, 6603618, 15921378, 1969838, 3243764, 16051741, 31064749 |
Thrombophilia |
Thrombophilia |
rs118203912, rs118203911, rs121918141, rs121918142, rs121918143, rs121918144, rs121918145, rs121918146, rs121918147, rs121918148, rs121918149, rs121918151, rs121918152, rs121918153, rs121918154, rs1558715857, rs121918155, rs121918157, rs121918158, rs2104934553, rs121918159, rs121918160, rs121918477, rs121918473, rs121918474, rs267606981, rs2107137679, rs121918475, rs387906674, rs387907201, rs369504169, rs142742242, rs373983977, rs368074804, rs574132670, rs757583846, rs863224838, rs121918476, rs1333329860, rs1553424043, rs1553808038, rs5017717, rs374476971, rs1553809314, rs1553423955, rs767112991, rs1558718572, rs571278160, rs766261022, rs1321566264, rs1559926604, rs1241365457, rs759677822, rs1448630830, rs1305782685, rs1571577365, rs1247269491, rs777486993, rs201907715, rs769277939, rs199469503, rs1575904540, rs199469494, rs199469471, rs1189377845, rs1576182848, rs1688218776, rs1456533664, rs1709033502, rs1708668246, rs1708665916 |
|
Thrombophilia, x-linked |
Thrombophilia, X-Linked, Due To Factor Ix Defect |
rs137852372, rs137852428, rs137852435, rs137852467, rs137852238, rs137852283, rs369414658, rs781928603, rs781943956, rs942909873 |
2472424, 23093250, 19846852, 2198809, 1864609, 19699296, 25470321, 2066105, 27824213, 18624698, 22639855, 29993188, 1969838, 22544209 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Bipolar disorder |
Bipolar Disorder |
|
1980485, 9132265, 2884369, 7760986 |
Factor viii deficiency |
Autosomal Hemophilia A, Factor VIII Deficiency |
|
16051741 |
Hemophilia b |
Severe hemophilia B, Mild hemophilia B, Moderately severe hemophilia B |
|
|
Malignant mesothelioma |
Malignant mesothelioma |
|
23056237 |
Thrombosis |
Deep Vein Thrombosis |
|
|
|
|
|