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F9 (coagulation factor IX)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2158
Gene nameGene Name - the full gene name approved by the HGNC.
Coagulation factor IX
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
F9
SynonymsGene synonyms aliases
F9 p22, FIX, HEMB, P19, PTC, THPH8
ChromosomeChromosome number
X
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq27.1
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes vitamin K-dependent coagulation factor IX that circulates in the blood as an inactive zymogen. This factor is converted to an active form by factor XIa, which excises the activation peptide and thus generates a heavy chain and a light ch
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1801202 C>T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs137852223 C>G,T Pathogenic Coding sequence variant, stop gained, missense variant
rs137852224 T>C Likely-pathogenic Coding sequence variant, missense variant
rs137852226 A>T Pathogenic Coding sequence variant, missense variant
rs137852227 C>T Pathogenic Coding sequence variant, stop gained
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT715255 hsa-miR-6845-3p HITS-CLIP 19536157
MIRT715254 hsa-miR-302b-5p HITS-CLIP 19536157
MIRT715253 hsa-miR-302d-5p HITS-CLIP 19536157
MIRT715252 hsa-miR-7106-3p HITS-CLIP 19536157
MIRT715255 hsa-miR-6845-3p HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
CEBPA Activation 8075306
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004175 Function Endopeptidase activity IDA 2592373, 20121197
GO:0004252 Function Serine-type endopeptidase activity NAS 8632006
GO:0005509 Function Calcium ion binding IDA 9169594, 14722079, 20121197
GO:0005515 Function Protein binding IPI 26157780, 26414444
GO:0005576 Component Extracellular region NAS 14718574
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P00740
Protein name Coagulation factor IX (EC 3.4.21.22) (Christmas factor) (Plasma thromboplastin component) (PTC) [Cleaved into: Coagulation factor IXa light chain; Coagulation factor IXa heavy chain]
Protein function Factor IX is a vitamin K-dependent plasma protein that participates in the intrinsic pathway of blood coagulation by converting factor X to its active form in the presence of Ca(2+) ions, phospholipids, and factor VIIIa. {ECO:0000269|PubMed:1730
PDB 1CFH , 1CFI , 1EDM , 1IXA , 1MGX , 1NL0 , 1RFN , 2WPH , 2WPI , 2WPJ , 2WPK , 2WPL , 2WPM , 3KCG , 3LC3 , 3LC5 , 4WM0 , 4WMA , 4WMB , 4WMI , 4WMK , 4WN2 , 4WNH , 4YZU , 4Z0K , 4ZAE , 5EGM , 5F84 , 5F85 , 5F86 , 5JB8 , 5JB9 , 5JBA , 5JBB , 5JBC , 5TNO , 5TNT , 5VYG , 6MV4 , 6RFK , 6X5J , 6X5L , 6X5P , 7AHV , 8EPC , 8EPH , 8EPK , 8OL9 , 9BVK , 9BVR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00594 Gla
52 92
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
Domain
PF00008 EGF
97 127
EGF-like domain
Domain
PF14670 FXa_inhibition
134 170
Domain
PF00089 Trypsin
227 454
Trypsin
Domain
Sequence
Sequence length 461
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Complement and coagulation cascades   Extrinsic Pathway of Fibrin Clot Formation
Intrinsic Pathway of Fibrin Clot Formation
Gamma-carboxylation of protein precursors
Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus
Removal of aminoterminal propeptides from gamma-carboxylated proteins
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Arthritis Degenerative polyarthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Hemophilia Hemophilia B, Hemophilia A rs1178811105, rs2147483647, rs137852241, rs137852243, rs1927322453, rs1927322926, rs1166164399 3009023, 22639855, 18624698, 26612714, 1902289, 11122099, 29993188, 3401602, 12604421, 9452115, 9169594, 1346975, 2592373, 25470321, 1615485, 8680410, 12588353, 9590153, 3286010, 2472424, 1958666, 19699296, 25251685, 3416069, 2372509, 1864609, 2753873, 26964564, 28752769, 8257988, 2388855, 2773937, 2738071, 3790720, 23093250, 8199596, 9639513, 9222764, 9600455, 16643212, 10698280, 7062952, 2066105, 8076946, 25330515, 2198809, 7981722, 2714791, 22544209, 2339358, 2162822, 30210749, 27824213, 2775660, 2713493, 8295821, 10094553, 6603618, 15921378, 1969838, 3243764, 16051741, 31064749
Thrombophilia Thrombophilia rs118203912, rs118203911, rs121918141, rs121918142, rs121918143, rs121918144, rs121918145, rs121918146, rs121918147, rs121918148, rs121918149, rs121918151, rs121918152, rs121918153, rs121918154, rs1558715857, rs121918155, rs121918157, rs121918158, rs2104934553, rs121918159, rs121918160, rs121918477, rs121918473, rs121918474, rs267606981, rs2107137679, rs121918475, rs387906674, rs387907201, rs369504169, rs142742242, rs373983977, rs368074804, rs574132670, rs757583846, rs863224838, rs121918476, rs1333329860, rs1553424043, rs1553808038, rs5017717, rs374476971, rs1553809314, rs1553423955, rs767112991, rs1558718572, rs571278160, rs766261022, rs1321566264, rs1559926604, rs1241365457, rs759677822, rs1448630830, rs1305782685, rs1571577365, rs1247269491, rs777486993, rs201907715, rs769277939, rs199469503, rs1575904540, rs199469494, rs199469471, rs1189377845, rs1576182848, rs1688218776, rs1456533664, rs1709033502, rs1708668246, rs1708665916
Thrombophilia, x-linked Thrombophilia, X-Linked, Due To Factor Ix Defect rs137852372, rs137852428, rs137852435, rs137852467, rs137852238, rs137852283, rs369414658, rs781928603, rs781943956, rs942909873 2472424, 23093250, 19846852, 2198809, 1864609, 19699296, 25470321, 2066105, 27824213, 18624698, 22639855, 29993188, 1969838, 22544209
Unknown
Disease name Disease term dbSNP ID References
Bipolar disorder Bipolar Disorder 1980485, 9132265, 2884369, 7760986
Factor viii deficiency Autosomal Hemophilia A, Factor VIII Deficiency 16051741
Hemophilia b Severe hemophilia B, Mild hemophilia B, Moderately severe hemophilia B
Malignant mesothelioma Malignant mesothelioma 23056237

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