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F5 (coagulation factor V)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2153
Gene nameGene Name - the full gene name approved by the HGNC.
Coagulation factor V
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
F5
SynonymsGene synonyms aliases
FVL, PCCF, RPRGL1, THPH2
ChromosomeChromosome number
1
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q24.2
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes an essential cofactor of the blood coagulation cascade. This factor circulates in plasma, and is converted to the active form by the release of the activation peptide by thrombin during coagulation. This generates a heavy chain and a lig
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs6007 T>C,G Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs6011 G>C Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs6025 C>A,T Benign, pathogenic, conflicting-interpretations-of-pathogenicity, drug-response, risk-factor Coding sequence variant, missense variant
rs6034 G>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs118203905 T>C Pathogenic Missense variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020806 hsa-miR-155-5p Proteomics 18668040
MIRT441857 hsa-miR-323a-3p PAR-CLIP 22100165
MIRT441856 hsa-miR-634 PAR-CLIP 22100165
MIRT441855 hsa-miR-5585-5p PAR-CLIP 22100165
MIRT441857 hsa-miR-323a-3p PAR-CLIP 22100165
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0002576 Process Platelet degranulation TAS
GO:0005507 Function Copper ion binding IEA
GO:0005515 Function Protein binding IPI 2844223, 6323392, 9556620
GO:0005576 Component Extracellular region NAS 14718574
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P12259
Protein name Coagulation factor V (Activated protein C cofactor) (Proaccelerin, labile factor) [Cleaved into: Coagulation factor V heavy chain; Coagulation factor V light chain]
Protein function Central regulator of hemostasis. It serves as a critical cofactor for the prothrombinase activity of factor Xa that results in the activation of prothrombin to thrombin.
PDB 1CZS , 1CZT , 1CZV , 3P6Z , 3P70 , 3S9C , 7KVE , 7KVF , 7KXY , 7TPP , 8FDG , 8TN9 , 9CTH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07732 Cu-oxidase_3
65 197
Multicopper oxidase
Domain
PF06049 LSPR
1077 1085
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1185 1193
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1194 1202
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1203 1211
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1230 1238
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1239 1247
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1257 1265
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1275 1283
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1293 1301
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1302 1310
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1320 1328
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1338 1346
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1356 1364
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1374 1382
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1383 1391
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1410 1418
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1428 1436
Coagulation Factor V LSPD Repeat
Repeat
PF06049 LSPR
1437 1445
Coagulation Factor V LSPD Repeat
Repeat
PF07732 Cu-oxidase_3
1641 1753
Multicopper oxidase
Domain
PF00754 F5_F8_type_C
1922 2058
F5/8 type C domain
Domain
PF00754 F5_F8_type_C
2081 2218
F5/8 type C domain
Domain
Sequence
MFPGCPRLWVLVVLGTSWVGWGSQGTEAAQLRQFYVAAQGISWSYRPEPTNSSLNLSVTS
FKKIVYREYEPYFKKEKPQSTISGLLGPTLYAEVGDIIKVHFKNKADKPLSIHPQGIRYS
KLSEGASYLDHTFPAEKMDDAVAPGREYTYEWSISEDSGPTHDDPPCLTHIYYSHENLIE
DFNSGLIGPLLICKKGT
LTEGGTQKTFDKQIVLLFAVFDESKSWSQSSSLMYTVNGYVNG
TMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQNHHKVSAITLVSATSTTANMTV
GPEGKWIISSLTPKHLQAGMQAYIDIKNCPKKTRNLKKITREQRRHMKRWEYFIAAEEVI
WDYAPVIPANMDKKYRSQHLDNFSNQIGKHYKKVMYTQYEDESFTKHTVNPNMKEDGILG
PIIRAQVRDTLKIVFKNMASRPYSIYPHGVTFSPYEDEVNSSFTSGRNNTMIRAVQPGET
YTYKWNILEFDEPTENDAQCLTRPYYSDVDIMRDIASGLIGLLLICKSRSLDRRGIQRAA
DIEQQAVFAVFDENKSWYLEDNINKFCENPDEVKRDDPKFYESNIMSTINGYVPESITTL
GFCFDDTVQWHFCSVGTQNEILTIHFTGHSFIYGKRHEDTLTLFPMRGESVTVTMDNVGT
WMLTSMNSSPRSKKLRLKFRDVKCIPDDDEDSYEIFEPPESTVMATRKMHDRLEPEDEES
DADYDYQNRLAAALGIRSFRNSSLNQEEEEFNLTALALENGTEFVSSNTDIIVGSNYSSP
SNISKFTVNNLAEPQKAPSHQQATTAGSPLRHLIGKNSVLNSSTAEHSSPYSEDPIEDPL
QPDVTGIRLLSLGAGEFKSQEHAKHKGPKVERDQAAKHRFSWMKLLAHKVGRHLSQDTGS
PSGMRPWEDLPSQDTGSPSRMRPWKDPPSDLLLLKQSNSSKILVGRWHLASEKGSYEIIQ
DTDEDTAVNNWLISPQNASRAWGESTPLANKPGKQSGHPKFPRVRHKSLQVRQDGGKSRL
KKSQFLIKTRKKKKEKHTHHAPLSPRTFHPLRSEAYNTFSERRLKHSLVLHKSNETSLPT
DLNQT
LPSMDFGWIASLPDHNQNSSNDTGQASCPPGLYQTVPPEEHYQTFPIQDPDQMHS
TSDPSHRSSSPELSEMLEYDRSHKSFPTDISQMSPSSEHEVWQTVISPDLSQVTLSPELS
QT
NLSPDLSHTTLSPELIQRNLSPALGQMPISPDLSHTTLSPDLSHTTLSLDLSQTNLSP
ELSQT
NLSPALGQMPLSPDLSHTTLSLDFSQTNLSPELSHMTLSPELSQTNLSPALGQMP
ISPDLSHT
TLSLDFSQTNLSPELSQTNLSPALGQMPLSPDPSHTTLSLDLSQTNLSPELS
QT
NLSPDLSEMPLFADLSQIPLTPDLDQMTLSPDLGETDLSPNFGQMSLSPDLSQVTLSP
DISDT
TLLPDLSQISPPPDLDQIFYPSESSQSLLLQEFNESFPYPDLGQMPSPSSPTLND
TFLSKEFNPLVIVGLSKDGTDYIEIIPKEEVQSSEDDYAEIDYVPYDDPYKTDVRTNINS
SRDPDNIAAWYLRSNNGNRRNYYIAAEEISWDYSEFVQRETDIEDSDDIPEDTTYKKVVF
RKYLDSTFTKRDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKS
SEGKTYEDDSPEWFKEDNAVQPNSSYTYVWHATERSGPESPGSACRAWAYYSAVNPEKDI
HSGLIGPLLICQK
GILHKDSNMPMDMREFVLLFMTFDEKKSWYYEKKSRSSWRLTSSEMK
KSHEFHAINGMIYSLPGLKMYEQEWVRLHLLNIGGSQDIHVVHFHGQTLLENGNKQHQLG
VWPLLPGSFKTLEMKASKPGWWLLNTEVGENQRAGMQTPFLIMDRDCRMPMGLSTGIISD
SQIKASEFLGYWEPRLARLNNGGSYNAWSVEKLAAEFASKPWIQVDMQKEVIITGIQTQG
AKHYLKSCYTTEFYVAYSSNQINWQIFKGNSTRNVMYFNGNSDASTIKENQFDPPIVARY
IRISPTRAYNRPTLRLEL
QGCEVNGCSTPLGMENGKIENKQITASSFKKSWWGDYWEPFR
ARLNAQGRVNAWQAKANNNKQWLEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQ
GVEWKPYRLKSSMVDKIFEGNTNTKGHVKNFFNPPIISRFIRVIPKTWNQSIALRLEL
FG
CDIY
Sequence length 2224
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Complement and coagulation cascades   Platelet degranulation
Common Pathway of Fibrin Clot Formation
COPII-mediated vesicle transport
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Cargo concentration in the ER
Post-translational protein phosphorylation
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Activated protein c resistance Activated Protein C Resistance, THROMBOPHILIA DUE TO ACTIVATED PROTEIN C RESISTANCE (disorder) rs118203912, rs118203911, rs1571577365 23188048, 26649017, 10666427, 7673148, 23900608, 11110695, 29179580, 3286010, 24523236, 16268462, 9616155, 21116184, 10391209, 28889200, 11858490, 10942390, 27090446, 16710414, 14617013, 9454742, 19486170, 7734374, 11583312, 7911872, 8164741, 11435304, 14695241
Bleeding disorder Bleeding Disorder, East Texas Type, East Texas bleeding disorder rs121918444, rs387906691, rs397514542, rs398122372, rs398122373, rs773148506, rs1064797083, rs1064797085, rs1064797087, rs761749948 23979162
Cerebral infarction Cerebral Infarction rs2230500
Colonic neoplasms Malignant tumor of colon, Colonic Neoplasms rs267607789, rs774277300, rs781222233, rs1060502734, rs1060503333, rs1339238483 25200834
Unknown
Disease name Disease term dbSNP ID References
Blood coagulation disorders Blood Coagulation Disorders 17721328
Brain infarction Subcortical Infarction
Budd-chiari syndrome Budd-Chiari Syndrome rs6025, rs9332701, rs6009, rs369516642, rs9332607, rs9287090, rs1046712, rs1800594, rs6032, rs4525, rs6018, rs6031, rs6021, rs6024, rs6017, rs6016, rs6037, rs6036, rs6015, rs6033, rs9332578, rs6023, rs6022, rs6029, rs6019, rs6028, rs2187952, rs75764442, rs9332678, rs191866237, rs9332673, rs188490117, rs886045539, rs886045540, rs773618429, rs886045543, rs148772659, rs200865371, rs149092241, rs6026, rs6011, rs144262027, rs13306334, rs139573207, rs13306332, rs369276714, rs6005, rs144979314, rs201078171, rs758832130, rs748350385, rs148752831, rs143152035, rs145625079, rs886045534, rs72708013, rs886045536, rs544753372, rs72708017, rs886045537, rs181328696, rs186962725, rs757104503, rs35369423, rs759428783, rs6008, rs199568344, rs141589936, rs751749207, rs886045547, rs149048805, rs886045548, rs149067268, rs199507543, rs9332695, rs370739570, rs375739973, rs537081933, rs9332485, rs41272465, rs886045552, rs9332677, rs9332675, rs376103455, rs6427196, rs886045535, rs559071301, rs753366128, rs9332676, rs2040444, rs9332674, rs886045538, rs534748300, rs180742904, rs115882472, rs886045541, rs372005449, rs182566496, rs886045542, rs374815777, rs886045544, rs886045545, rs6010, rs886045546, rs763080313, rs200204656, rs559683767, rs543751483, rs373880789, rs6006, rs41272457, rs115148599, rs9332608, rs188882337, rs886045549, rs146408488, rs575766548, rs776949074, rs141768227, rs9332604, rs886045550, rs574610215, rs1557573, rs201510575, rs112333778, rs886045551, rs6020, rs781434840, rs200934105, rs116416322, rs543172813, rs529050943, rs1057515594, rs1038207109, rs1057515590, rs1057515597, rs139964957, rs1057515601, rs143509841, rs41272455, rs373172802, rs6007, rs6034, rs150104888, rs747456938, rs185294741 24755609, 26238013
Cerebral ischemia Brain Ischemia 15534175

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