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EYA1 (EYA transcriptional coactivator and phosphatase 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2138
Gene nameGene Name - the full gene name approved by the HGNC.
EYA transcriptional coactivator and phosphatase 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
EYA1
SynonymsGene synonyms aliases
BOP, BOR, BOS1, OFC1, OTFCS
ChromosomeChromosome number
8
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8q13.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the eyes absent (EYA) family of proteins. The encoded protein may play a role in the developing kidney, branchial arches, eye, and ear. Mutations of this gene have been associated with branchiootorenal dysplasia syndrome, bra
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121909195 G>A,C Pathogenic Missense variant, stop gained, coding sequence variant
rs121909196 C>T Pathogenic Missense variant, coding sequence variant
rs121909197 T>C Pathogenic Missense variant, coding sequence variant
rs121909198 C>T Pathogenic Intron variant, coding sequence variant, missense variant
rs121909199 C>T Likely-benign, uncertain-significance, benign, pathogenic Missense variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000035 hsa-miR-562 Luciferase reporter assay 19789318
MIRT973690 hsa-miR-101 CLIP-seq
MIRT973691 hsa-miR-1243 CLIP-seq
MIRT973692 hsa-miR-128 CLIP-seq
MIRT973693 hsa-miR-2278 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004725 Function Protein tyrosine phosphatase activity IBA 21873635
GO:0004725 Function Protein tyrosine phosphatase activity IDA 19234442
GO:0005515 Function Protein binding IPI 15141091, 28514442, 32296183
GO:0005634 Component Nucleus IBA 21873635
GO:0005634 Component Nucleus IDA 19234442, 19497856
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q99502
Protein name Protein phosphatase EYA1 (EC 3.1.3.16) (EC 3.1.3.48) (Eyes absent homolog 1)
Protein function Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for SIX2, SIX4 and SIX5 (By similarity). Tyrosine phosphatase that dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph) and promotes efficien
Family and domains
Sequence
MEMQDLTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTEVKTEPMSSSETASTTADGS
LNNFSGSAIGSSSFSPRPTHQFSPPQIYPSNRPYPHILPTPSSQTMAAYGQTQFTTGMQQ
ATAYATYPQPGQPYGISSYGALWAGIKTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAPY
SYQMQGSSFTTSSGIYTGNNSLTNSSGFNSSQQDYPSYPSFGQGQYAQYYNSSPYPAHYM
TSSNTSPTTPSTNATYQLQEPPSGITSQAVTDPTAEYSTIHSPSTPIKDSDSDRLRRGSD
GKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGL
RMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCL
ATGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLT
LALKALSLIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFER
IIQRFGRKVVYVVIGDGVEEEQGAKKHAMPFWRISSHSDLMALHHALELEYL
Sequence length 592
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Transcriptional misregulation in cancer   Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Anterior segment anomalies ANTERIOR SEGMENT ANOMALIES WITH OR WITHOUT CATARACT rs121909197 23840632, 9359046
Branchiooculofacial syndrome Branchio-Oculo-Facial Syndrome rs121909196, rs121909574, rs121909575, rs267607108, rs151344525, rs793888540, rs793888541, rs151344530, rs1554110735, rs1554110673, rs1554110994, rs151344531, rs151344528, rs1554111717, rs1554111734, rs1554111751, rs1554112492, rs1554111749, rs1581262652, rs151344527 12834866
Branchiootic syndrome BRANCHIOOTIC SYNDROME 1, Branchiootic syndrome rs121909196, rs121909202, rs606231356, rs104894478, rs80356459, rs80356460, rs121909770, rs863223330, rs797044960, rs1064794308, rs1131691667, rs1563630117, rs397517917, rs1816289467 9603436, 10655545, 9359046, 12701758, 16691597, 23840632, 9359046, 23840632
Branchiootorenal syndrome Branchio-Oto-Renal Syndrome, Branchiootorenal Syndrome 2 rs80356463 14628042, 10072433, 19206155, 18220287, 12834866, 19951260, 11734542, 12834866
Unknown
Disease name Disease term dbSNP ID References
Abnormal dermatoglyphic pattern Abnormal dermatoglyphic pattern
Asymmetric crying face association Asymmetric crying face association 15493068
Bor syndrome BOR syndrome
Branchioma Branchioma

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