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EVC (EvC ciliary complex subunit 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2121
Gene nameGene Name - the full gene name approved by the HGNC.
EvC ciliary complex subunit 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
EVC
SynonymsGene synonyms aliases
DWF-1, EVC1, EVCL
ChromosomeChromosome number
4
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4p16.2
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a protein containing a leucine zipper and a transmembrane domain. This gene has been implicated in both Ellis-van Creveld syndrome (EvC) and Weyers acrodental dysostosis. [provided by RefSeq, Jul 2008]
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs35401386 G>A,C,T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs41269547 A>G Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269549 G>A Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269557 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs121908424 C>T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018424 hsa-miR-335-5p Microarray 18185580
MIRT042772 hsa-miR-339-5p CLASH 23622248
MIRT037807 hsa-miR-455-3p CLASH 23622248
MIRT691894 hsa-miR-2278 HITS-CLIP 23313552
MIRT691893 hsa-miR-4768-3p HITS-CLIP 23313552
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development TAS 10700184
GO:0003416 Process Endochondral bone growth ISS
GO:0005737 Component Cytoplasm IEA
GO:0005929 Component Cilium IDA 21356043
GO:0007224 Process Smoothened signaling pathway IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P57679
Protein name EvC complex member EVC (DWF-1) (Ellis-van Creveld syndrome protein)
Protein function Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Involved in endochondral growth and skeletal development.
Family and domains
Sequence
MARGGAACKSDARLLLGRDALRPAPALLAPAVLLGAALGLGLGLWLGCRAGRQRTRHQKD
DTQNLLKNLESNAQTPSETGSPSRRRKREVQMSKDKEAVDECEPPSNSNITAFALKAKVI
YPINQKFRPLADGSSNPSLHENLKQAVLPHQPVEASPSSSLGSLSQGEKDDCSSSSSVHS
ATSDDRFLSRTFLRVNAFPEVLACESVDVDLCIYSLHLKDLLHLDTALRQEKHMMFIQIF
KMCLLDLLPKKKSDDELYQKILSKQEKDLEELEKGLQVKLSNTEMSGAGDSEYITLADVE
KKEREYSEQLIDNMEAFWKQMANIQHFLVDQFKCSSSKARQLMMTLTERMIAAEGLLCDS
QELQALDALERTMGRAHMAKVIEFLKLQVQEETRCRLAAISHGLELLAGEGKLSGRQKEE
LLTQQHKAFWQEAERFSREFVQRGKDLVTASLAHQVEGTAKLTLAQEEEQRSFLAEAQPT
ADPEKFLEAFHEVLERQRLMQCDLEEEENVRATEAVVALCQELYFSTVDTFQKFVDALFL
QTLPGMTGLPPEECDYLRQEVQENAAWQLGKSNRFRRQQWKLFQELLEQDQQVWMEECAL
SSVLQTHLREDHEGTIRGVLGRLGGLTEESTRCVLQGHDLLLRSALRRLALRGNALATLT
QMRLSGKKHLLQELREQRALEQGSSQCLDEHQWQLLRALEARVLEEASRLEEEAQQTRLQ
LQQRLLAEAQEVGQLLQQHMECAIGQALLVHARNAATKSRAKDRDDFKRTLMEAAVESVY
VTSAGVSRLVQAYYQQIGRIMEDHEERKLQHLKTLQGERMENYKLRKKQELSNPSSGSRT
AGGAHETSQAVHQRMLSQQKRFLAQFPVHQQMRLHAQQQQAGVMDLLEAQLETQLQEAEQ
NFISELAALARVPLAESKLLPAKRGLLEKPLRTKRKKPLPQERGDLGVPNNEDLASGDQT
SGSLSSKRLSQQESEAGDSGNSKKMLKRRSNL
Sequence length 992
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Hedgehog signaling pathway   Hedgehog 'on' state
Activation of SMO
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Acrofacial dysostosis Acrofacial dysostosis, Weyers type rs794729674, rs875989814, rs1064795108, rs1377622831
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074, rs267606903, rs121912677, rs387906585, rs387906773, rs72554028, rs587782928, rs587782929, rs587782930, rs587784067, rs1555226315, rs879253754, rs1114167356, rs773922431, rs1554093487, rs1554093433, rs1554093461, rs1561621507, rs1561619801, rs766692577, rs1581108237, rs1581111034, rs1579663872, rs1583066622, rs1456289029, rs1761430125
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Unknown
Disease name Disease term dbSNP ID References
Cubitus valgus Acquired cubitus valgus
Alveolar ridge abnormality Alveolar ridge abnormality
Camptodactyly of fingers Clinodactyly of the 5th finger
Ciliopathies Ciliopathies

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