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NLRC3 (NLR family CARD domain containing 3)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
197358
Gene nameGene Name - the full gene name approved by the HGNC.
NLR family CARD domain containing 3
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
NLRC3
SynonymsGene synonyms aliases
CLR16.2, NOD3
ChromosomeChromosome number
16
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p13.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a NOD-like receptor family member. The encoded protein is a cytosolic regulator of innate immunity. This protein directly interacts with stimulator of interferon genes (STING), to prevent its proper trafficking, resulting in disruption o
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT701391 hsa-miR-548c-3p HITS-CLIP 23313552
MIRT701390 hsa-miR-6771-3p HITS-CLIP 23313552
MIRT701389 hsa-miR-4293 HITS-CLIP 23313552
MIRT701388 hsa-miR-3675-3p HITS-CLIP 23313552
MIRT701387 hsa-miR-4684-5p HITS-CLIP 23313552
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003674 Function Molecular_function ND
GO:0005515 Function Protein binding IPI 24560620, 25277106
GO:0005524 Function ATP binding IEA
GO:0005737 Component Cytoplasm IDA 15705585, 24560620, 25277106
GO:0005829 Component Cytosol IBA 21873635
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q7RTR2
Protein name NLR family CARD domain-containing protein 3 (CARD15-like protein) (Caterpiller protein 16.2) (CLR16.2) (NACHT, LRR and CARD domains-containing protein 3) (Nucleotide-binding oligomerization domain protein 3)
Protein function Negative regulator of the innate immune response (PubMed:15705585, PubMed:22863753, PubMed:25277106). Attenuates signaling pathways activated by Toll-like receptors (TLRs) and the DNA sensor STING/TMEM173 in response to pathogen-associated molec
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05729 NACHT
139 305
NACHT domain
Domain
PF17779 NOD2_WH
395 453
NOD2 winged helix domain
Domain
PF17776 NLRC4_HD2
455 582
NLRC4 helical domain HD2
Domain
PF13516 LRR_6
664 687
Leucine Rich repeat
Repeat
PF13516 LRR_6
692 715
Leucine Rich repeat
Repeat
PF13516 LRR_6
721 743
Leucine Rich repeat
Repeat
PF13516 LRR_6
776 799
Leucine Rich repeat
Repeat
PF13516 LRR_6
804 827
Leucine Rich repeat
Repeat
PF13516 LRR_6
832 855
Leucine Rich repeat
Repeat
PF13516 LRR_6
860 883
Leucine Rich repeat
Repeat
PF13516 LRR_6
888 911
Leucine Rich repeat
Repeat
PF13516 LRR_6
916 939
Leucine Rich repeat
Repeat
PF13516 LRR_6
972 995
Leucine Rich repeat
Repeat
PF13516 LRR_6
1000 1023
Leucine Rich repeat
Repeat
PF13516 LRR_6
1028 1051
Leucine Rich repeat
Repeat
Sequence
MRKQEVRTGREAGQGHGTGSPAEQVKALMDLLAGKGSQGSQAPQALDRTPDAPLGPCSND
SRIQRHRKALLSKVGGGPELGGPWHRLASLLLVEGLTDLQLREHDFTQVEATRGGGHPAR
TVALDRLFLPLSRVSVPPRVSITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFR
DLNTHEKLCADRLICSVFPHVGEPSLAVAVPARALLILDGLDECRTPLDFSNTVACTDPK
KEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLVDRMTEIRGFNEEEIKVCLEQ
MFPED
QALLGWMLSQVQADRALYLMCTVPAFCRLTGMALGHLWRSRTGPQDAELWPPRTL
CELYSWYFRMALSGEGQEKGKASPRIEQVAHGGRKMVGTLGRLAFHGLLKKKYVFYEQDM
KAFGVDLALLQGAPCSCFLQREETLASSVAYCF
THLSLQEFVAAAYYYGASRRAIFDLFT
ESGVSWPRLGFLTHFRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSLLAQGEHQ
AYRTQVAELLQGCLRPDAAVCARAINVLHCLHELQHTELARS
VEEAMESGALARLTGPAH
RAALAYLLQVSDACAQEANLSLSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSV
LSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKI
NRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSL
KELMFSSNSIGDGGAKALA
EALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLS
LRENSISPEGAQAIA
HALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWN
FIQAGAAQALG
QALQLNRSLTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGA
SGAQVLGEALAVNRTLEILDLRGNAIGVAGAKALANALKVNSSLRRLNLQENSLGMDGAI
CIA
TALSGNHRLQHINLQGNHIGDSGARMISEAIKTNAPTCTVEM
Sequence length 1065
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
Reactome
    IRF3-mediated induction of type I IFN
Associated diseases
Unknown
Disease name Disease term dbSNP ID References
Liver carcinoma Liver carcinoma 30081150

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