EGR1 (early growth response 1)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
1958 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Early growth response 1 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
EGR1 |
SynonymsGene synonyms aliases
|
AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268, ZIF268, ZNF225 |
ChromosomeChromosome number
|
5 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
5q31.2 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene belongs to the EGR family of C2H2-type zinc-finger proteins. It is a nuclear protein and functions as a transcriptional regulator. The products of target genes it activates are required for differentitation and mitogenesis |
miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
|
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000122 |
Process |
Negative regulation of transcription by RNA polymerase II |
IEA |
|
GO:0000785 |
Component |
Chromatin |
IDA |
19307576 |
GO:0000785 |
Component |
Chromatin |
ISA |
|
GO:0000976 |
Function |
Transcription regulatory region sequence-specific DNA binding |
IDA |
18718911 |
GO:0000977 |
Function |
RNA polymerase II transcription regulatory region sequence-specific DNA binding |
IDA |
14979875, 19307576 |
GO:0000978 |
Function |
RNA polymerase II cis-regulatory region sequence-specific DNA binding |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ISA |
|
GO:0001228 |
Function |
DNA-binding transcription activator activity, RNA polymerase II-specific |
IDA |
19307576 |
GO:0001666 |
Process |
Response to hypoxia |
ISS |
|
GO:0002931 |
Process |
Response to ischemia |
ISS |
|
GO:0003677 |
Function |
DNA binding |
IDA |
12560508 |
GO:0003700 |
Function |
DNA-binding transcription factor activity |
IDA |
12560508 |
GO:0005515 |
Function |
Protein binding |
IPI |
19057511, 21743491 |
GO:0005634 |
Component |
Nucleus |
IDA |
19057511, 20018936, 20363028 |
GO:0005634 |
Component |
Nucleus |
ISS |
|
GO:0005654 |
Component |
Nucleoplasm |
IDA |
|
GO:0005654 |
Component |
Nucleoplasm |
TAS |
|
GO:0005737 |
Component |
Cytoplasm |
IDA |
19057511, 20363028 |
GO:0005737 |
Component |
Cytoplasm |
ISS |
|
GO:0006357 |
Process |
Regulation of transcription by RNA polymerase II |
IBA |
21873635 |
GO:0008270 |
Function |
Zinc ion binding |
IDA |
25258363 |
GO:0009749 |
Process |
Response to glucose |
IEA |
|
GO:0010385 |
Function |
Double-stranded methylated DNA binding |
IDA |
25258363 |
GO:0010628 |
Process |
Positive regulation of gene expression |
IMP |
24244514 |
GO:0030217 |
Process |
T cell differentiation |
IEA |
|
GO:0030509 |
Process |
BMP signaling pathway |
IEA |
|
GO:0032722 |
Process |
Positive regulation of chemokine production |
ISS |
|
GO:0032731 |
Process |
Positive regulation of interleukin-1 beta production |
ISS |
|
GO:0032868 |
Process |
Response to insulin |
IEA |
|
GO:0032922 |
Process |
Circadian regulation of gene expression |
ISS |
|
GO:0033233 |
Process |
Regulation of protein sumoylation |
IDA |
19057511 |
GO:0035035 |
Function |
Histone acetyltransferase binding |
IPI |
20018936 |
GO:0035914 |
Process |
Skeletal muscle cell differentiation |
IEA |
|
GO:0042981 |
Process |
Regulation of apoptotic process |
IEA |
|
GO:0043565 |
Function |
Sequence-specific DNA binding |
IDA |
1662794, 25258363 |
GO:0044729 |
Function |
Hemi-methylated DNA-binding |
IDA |
25258363 |
GO:0044849 |
Process |
Estrous cycle |
ISS |
|
GO:0045475 |
Process |
Locomotor rhythm |
ISS |
|
GO:0045893 |
Process |
Positive regulation of transcription, DNA-templated |
IDA |
12560508 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IDA |
19057511, 26089202 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IGI |
14979875 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IMP |
14979875, 20018936 |
GO:0046886 |
Process |
Positive regulation of hormone biosynthetic process |
ISS |
|
GO:0060086 |
Process |
Circadian temperature homeostasis |
ISS |
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GO:0060337 |
Process |
Type I interferon signaling pathway |
TAS |
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GO:0061418 |
Process |
Regulation of transcription from RNA polymerase II promoter in response to hypoxia |
IEA |
|
GO:0070498 |
Process |
Interleukin-1-mediated signaling pathway |
IMP |
20018936 |
GO:0071480 |
Process |
Cellular response to gamma radiation |
IEA |
|
GO:0071504 |
Process |
Cellular response to heparin |
ISS |
|
GO:0071506 |
Process |
Cellular response to mycophenolic acid |
ISS |
|
GO:0072110 |
Process |
Glomerular mesangial cell proliferation |
ISS |
|
GO:0072303 |
Process |
Positive regulation of glomerular metanephric mesangial cell proliferation |
ISS |
|
GO:0090090 |
Process |
Negative regulation of canonical Wnt signaling pathway |
IEA |
|
GO:0098759 |
Process |
Cellular response to interleukin-8 |
IDA |
20363028 |
GO:1901216 |
Process |
Positive regulation of neuron death |
ISS |
|
GO:1902895 |
Process |
Positive regulation of pri-miRNA transcription by RNA polymerase II |
IDA |
19307576 |
GO:1902949 |
Process |
Positive regulation of tau-protein kinase activity |
ISS |
|
GO:1990837 |
Function |
Sequence-specific double-stranded DNA binding |
IDA |
28473536 |
GO:1990841 |
Function |
Promoter-specific chromatin binding |
IDA |
20363028 |
GO:2000182 |
Process |
Regulation of progesterone biosynthetic process |
ISS |
|
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P18146 |
Protein name |
Early growth response protein 1 (EGR-1) (AT225) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor ETR103) (Transcription factor Zif268) (Zinc finger protein 225) (Zinc finger protein Krox-24) |
Protein function |
Transcriptional regulator (PubMed:20121949). Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes (By similarity). Binds double-stranded target DNA, irrespective of the cytosine methylatio |
PDB |
4R2A
,
4R2C
,
4R2D
,
4X9J
,
5N14
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF11928 |
DUF3446 |
135 → 219 |
Early growth response N-terminal domain |
Domain |
PF00096 |
zf-C2H2 |
338 → 362 |
Zinc finger, C2H2 type |
Domain |
PF00096 |
zf-C2H2 |
368 → 390 |
Zinc finger, C2H2 type |
Domain |
PF00096 |
zf-C2H2 |
396 → 418 |
Zinc finger, C2H2 type |
Domain |
PF11914 |
DUF3432 |
424 → 462 |
Domain of unknown function (DUF3432) |
Repeat |
PF11914 |
DUF3432 |
452 → 530 |
Domain of unknown function (DUF3432) |
Repeat |
|
Sequence |
|
Sequence length |
543 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Arthritis |
Juvenile arthritis |
rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 |
19565504 |
Autoimmune diseases |
Autoimmune Diseases |
rs41285370, rs869025224 |
25055964 |
Cholestasis |
Cholestasis |
rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 |
21224055 |
Intrahepatic cholestasis |
Intrahepatic Cholestasis |
rs121918299, rs80338722, rs80338725, rs80338719, rs80338723, rs80338726, rs72549401, rs11568372, rs1553469602, rs387907317, rs387906354, rs752919965, rs72549397, rs111033609, rs121909099, rs387906381, rs121909100, rs121909101, rs121909104, rs121909105, rs387906526, rs121918440, rs387906527, rs72552778, rs387906529, rs121918443, rs72552780, rs80338724, rs80338715, rs80338727, rs80338729, rs80338716, rs80338717, rs398122839, rs515726137, rs587777519, rs587777520, rs587777521, rs879255644, rs113090017, rs864321695, rs776869985, rs864321697, rs80338720, rs746155190, rs879255504, rs886041948, rs886042562, rs769910565, rs758069019, rs886043807, rs72549402, rs72549395, rs188824058, rs763782349, rs375315619, rs754287486, rs1057518679, rs1060499649, rs1060499579, rs1554660803, rs1554407511, rs774824767, rs771690686, rs752992432, rs1553466082, rs72549396, rs772294884, rs764513998, rs1202682161, rs759202962, rs1562774655, rs1562831765, rs1562945221, rs917981474, rs1558927163, rs765889649, rs1562976061, rs72549399, rs1459273753, rs377160065, rs1559183717, rs760750012, rs1051861187, rs1558898789, rs928915940, rs752757689, rs1584678508, rs764581483, rs1574453508, rs751511532, rs1182781290, rs376368459, rs762702807, rs1578499691, rs199791850, rs1452792080, rs1458423947, rs1584747270, rs1584750653, rs1599066459, rs1599069873, rs1599166106, rs1574462504, rs1593114820, rs1057524081, rs1588081022, rs777460754, rs1251192873, rs1588117076, rs748671901, rs139314808, rs749009273, rs1588080674, rs1588080680, rs1588127136, rs1588135086, rs757693457, rs1574445178, rs768922690, rs1584422832, rs1584433525, rs1312396424, rs1792048079, rs774411820, rs575729461 |
22094456, 18364083 |
Lung cancer |
Malignant neoplasm of lung |
rs121913530, rs121913529, rs878855122, rs1057519784, rs770315135 |
27935865 |
Mesothelioma |
Mesothelioma |
rs121907908, rs387906350, rs387906351 |
15878867 |
Prostate cancer |
Malignant neoplasm of prostate |
rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 |
16552752 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Cerebral ischemia |
Brain Ischemia |
|
17394460 |
Cholangitis |
Cholangitis |
|
25055964 |
Hydronephrosis |
Hydronephrosis |
|
25015655 |
Juvenile arthritis |
Juvenile psoriatic arthritis |
|
19565504 |
Liver carcinoma |
Liver carcinoma |
|
28284560 |
Lung neoplasms |
Lung Neoplasms |
|
27935865 |
Seronegative polyarthritis |
Polyarthritis, Juvenile, Rheumatoid Factor Negative |
|
19565504 |
Polyarthritis, rheumatoid factor positive |
Polyarthritis, Juvenile, Rheumatoid Factor Positive |
|
19565504 |
Prostatic neoplasms |
Prostatic Neoplasms |
|
16552752 |
Still disease |
Juvenile-Onset Still Disease |
|
19565504 |
|
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