TOR1A (torsin family 1 member A)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
1861 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Torsin family 1 member A |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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TOR1A |
SynonymsGene synonyms aliases
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AMC5, DQ2, DYT1 |
ChromosomeChromosome number
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9 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
9q34.11 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene is a member of the AAA family of adenosine triphosphatases (ATPases), is related to the Clp protease/heat shock family and is expressed prominently in the substantia nigra pars compacta. Mutations in this gene result in th |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs1801968 |
C>G,T |
Risk-factor, likely-benign, benign |
Missense variant, coding sequence variant, non coding transcript variant |
rs80358233 |
CTC>- |
Pathogenic, pathogenic-likely-pathogenic |
Coding sequence variant, inframe deletion, non coding transcript variant |
rs267607134 |
A>T |
Uncertain-significance, pathogenic, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs727502811 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs760768475 |
G>A |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, stop gained |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000338 |
Process |
Protein deneddylation |
IMP |
21102408 |
GO:0005515 |
Function |
Protein binding |
IPI |
15147511, 15505207, 15767459, 18167355, 18827015, 21102408, 23569223, 25416956, 32296183, 32814053 |
GO:0005524 |
Function |
ATP binding |
IEA |
|
GO:0005635 |
Component |
Nuclear envelope |
IBA |
21873635 |
GO:0005635 |
Component |
Nuclear envelope |
ISS |
|
GO:0005783 |
Component |
Endoplasmic reticulum |
IDA |
12671990 |
GO:0005788 |
Component |
Endoplasmic reticulum lumen |
IBA |
21873635 |
GO:0005788 |
Component |
Endoplasmic reticulum lumen |
IDA |
17037984, 20015956 |
GO:0005829 |
Component |
Cytosol |
TAS |
|
GO:0005856 |
Component |
Cytoskeleton |
IEA |
|
GO:0006979 |
Process |
Response to oxidative stress |
IEA |
|
GO:0006996 |
Process |
Organelle organization |
ISS |
|
GO:0006998 |
Process |
Nuclear envelope organization |
ISS |
|
GO:0007155 |
Process |
Cell adhesion |
IMP |
16361107 |
GO:0008021 |
Component |
Synaptic vesicle |
IDA |
21102408 |
GO:0008092 |
Function |
Cytoskeletal protein binding |
IPI |
16361107, 18827015 |
GO:0016020 |
Component |
Membrane |
IDA |
23569223 |
GO:0016887 |
Function |
ATPase activity |
IBA |
21873635 |
GO:0016887 |
Function |
ATPase activity |
IDA |
23569223 |
GO:0019894 |
Function |
Kinesin binding |
IBA |
21873635 |
GO:0019894 |
Function |
Kinesin binding |
IPI |
14970196 |
GO:0030141 |
Component |
Secretory granule |
ISS |
|
GO:0030426 |
Component |
Growth cone |
ISS |
|
GO:0030659 |
Component |
Cytoplasmic vesicle membrane |
ISS |
|
GO:0031175 |
Process |
Neuron projection development |
IMP |
16361107 |
GO:0031965 |
Component |
Nuclear membrane |
IDA |
|
GO:0034504 |
Process |
Protein localization to nucleus |
IBA |
21873635 |
GO:0034504 |
Process |
Protein localization to nucleus |
IMP |
18827015 |
GO:0034504 |
Process |
Protein localization to nucleus |
ISS |
|
GO:0042406 |
Component |
Extrinsic component of endoplasmic reticulum membrane |
IDA |
17037984 |
GO:0042802 |
Function |
Identical protein binding |
IPI |
20015956 |
GO:0043231 |
Component |
Intracellular membrane-bounded organelle |
IDA |
|
GO:0044319 |
Process |
Wound healing, spreading of cells |
ISS |
|
GO:0045104 |
Process |
Intermediate filament cytoskeleton organization |
IMP |
16361107 |
GO:0048489 |
Process |
Synaptic vesicle transport |
IMP |
18167355 |
GO:0051082 |
Function |
Unfolded protein binding |
IEA |
|
GO:0051085 |
Process |
Chaperone cofactor-dependent protein refolding |
IEA |
|
GO:0051584 |
Process |
Regulation of dopamine uptake involved in synaptic transmission |
IDA |
15505207 |
GO:0051787 |
Function |
Misfolded protein binding |
IEA |
|
GO:0061077 |
Process |
Chaperone-mediated protein folding |
IDA |
20169475 |
GO:0070062 |
Component |
Extracellular exosome |
HDA |
19199708 |
GO:0071712 |
Process |
ER-associated misfolded protein catabolic process |
ISS |
|
GO:0071763 |
Process |
Nuclear membrane organization |
IBA |
21873635 |
GO:0071763 |
Process |
Nuclear membrane organization |
ISS |
|
GO:0072321 |
Process |
Chaperone-mediated protein transport |
IDA |
15505207 |
GO:1900244 |
Process |
Positive regulation of synaptic vesicle endocytosis |
IMP |
21102408 |
GO:2000008 |
Process |
Regulation of protein localization to cell surface |
IMP |
15505207 |
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
O14656 |
Protein name |
Torsin-1A (Dystonia 1 protein) (Torsin ATPase-1A) (EC 3.6.4.-) (Torsin family 1 member A) |
Protein function |
Protein with chaperone functions important for the control of protein folding, processing, stability and localization as well as for the reduction of misfolded protein aggregates. Involved in the regulation of synaptic vesicle recycling, control |
PDB |
5J1S
,
5J1T
,
6OIF
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF06309 |
Torsin |
44 → 169 |
Torsin |
Family |
|
Sequence |
|
Sequence length |
332 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Dystonia |
Dystonia Musculorum Deformans, Dystonia Disorders, Idiopathic familial dystonia, Adult-Onset Dystonias, Adult-Onset Idiopathic Focal Dystonias, Adult-Onset Idiopathic Torsion Dystonias, Autosomal Dominant Familial Dystonia, Autosomal Recessive Familial Dystonia, Childhood Onset Dystonias, Dystonia, Primary, Dystonia, Secondary, Dystonias, Sporadic, Familial Dystonia, DYSTONIA 1, TORSION, AUTOSOMAL DOMINANT, Early onset torsion dystonia |
rs1586456293, rs1586456350, rs1586456278, rs267607112, rs137852968, rs80358233, rs121434410, rs730880307, rs104894433, rs104894437, rs2140127822, rs104894438, rs2140074226, rs104894439, rs104894440, rs2140073990, rs104894441, rs104894444, rs80356532, rs80356533, rs80356535, rs80356536, rs80356537, rs267606670, rs104893665, rs121917747, rs121909739, rs80359818, rs387907176, rs387907177, rs387907281, rs387907282, rs398122887, rs387907312, rs587776922, rs1565132917, rs587776923, rs1277790116, rs398122924, rs398122925, rs398122926, rs398122927, rs398122928, rs587776983, rs397515577, rs587777428, rs587777771, rs397515382, rs606231443, rs606231442, rs606231441, rs549006436, rs606231439, rs606231437, rs606231435, rs606231434, rs557052809, rs606231432, rs542652468, rs786205675, rs775863165, rs767517186, rs139260335, rs796053263, rs796053254, rs767399782, rs864309572, rs869320661, rs779204655, rs879253875, rs886039379, rs1555865401, rs587777468, rs886041396, rs1057518117, rs782175860, rs1057518953, rs113371321, rs1057518942, rs1057519278, rs1057519279, rs1057519280, rs1057519281, rs1057519282, rs1057519283, rs1057519284, rs988395114, rs1060500993, rs1064795234, rs1064797245, rs1064797344, rs1131691345, rs1131691307, rs749414480, rs1555358507, rs1555727493, rs1555362835, rs1555859571, rs763183959, rs1555859157, rs1555731819, rs879255368, rs1555731976, rs1554599616, rs1554599983, rs1554599712, rs1555360050, rs760768475, rs1566687487, rs1568379151, rs1563644456, rs1563646198, rs1563644810, rs1568853466, rs1573882268, rs1252185897, rs1586456404, rs1590612392, rs1590658782, rs1599706613, rs1599715341, rs1599719130, rs1590168246, rs1590169710, rs1599689373, rs1599712456, rs1599712523, rs1599719534, rs1586457084, rs1478393931, rs748888652, rs1599679995, rs1599680351, rs1459799356, rs1599687853, rs1599706511, rs1599725621, rs1586459408, rs1596050386, rs1599676503, rs1566687244, rs1586457060, rs1599665134, rs1599668553, rs1670619549, rs1802674870, rs1802756440, rs2075090666, rs1969024891, rs1802672249, rs2039866854 |
23222958, 18827015, 11523564, 9288096, 10627938, 25403864, 27490483, 21168499, 18167355, 15505207, 19955557, 18477710, 16537570, 24896178, 9576529, 16361107, 14970196, 20169475, 10435508, 28516161, 17428918, 21102408, 16537570, 11523564 |
Limb-onset dystonia |
Early-onset generalized limb-onset dystonia |
rs80358233, rs760768475 |
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Myoclonic dystonia |
Myoclonic dystonia |
rs121908489, rs121908490, rs863223283, rs121908491, rs863223284, rs1584531843, rs121908492, rs863223285, rs398123812, rs786205860, rs794727794, rs886039595, rs1057517990, rs1057519246, rs1189469219, rs1064794321, rs1064797339, rs1554352819, rs1554355416, rs1554353106, rs1554345052, rs1554352952, rs1554358727, rs1554352906, rs1554345077, rs1554345162, rs1554345170, rs1562806242, rs1562805960, rs1562812370, rs1562853011, rs1562811414, rs1584637958, rs1584663425, rs1584663290, rs1584546131, rs372686312, rs1584546494, rs1584692239, rs1584700882, rs1584546238, rs1799563986 |
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Prostate cancer |
Prostate carcinoma, Prostate cancer, familial |
rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 |
29892016 |
Prostate cancer, hereditary |
PROSTATE CANCER, HEREDITARY, 1 |
rs387906327, rs193929331, rs74315365, rs10993994, rs397516896, rs794729219, rs121913349, rs587782641, rs1114167673, rs1597371666, rs2073394466 |
29892016 |
Scoliosis |
Scoliosis, unspecified |
rs1057518828, rs147296805, rs758163506, rs1555613564, rs1596852902, rs1596853067, rs1596853085 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Anxiety disorder |
Anxiety |
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Blepharospasm |
Blepharospasm |
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Dysarthria |
Dysarthria |
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Focal dystonia |
Focal Dystonia |
|
23222958 |
Mental depression |
Depressive disorder, Recurrent depression |
rs587778876, rs587778877 |
15326234 |
Myoclonus-dystonia syndrome |
Myoclonus-dystonia syndrome |
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Obsessive-compulsive disorder |
Obsessive compulsive behavior |
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Panic disorder |
Panic Attacks |
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Personality disorders |
Personality Disorders |
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Pycnodysostosis |
Pseudodystonia |
|
23222958 |
Spinal cord myoclonus |
Spinal cord myoclonus |
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Writer`s cramp |
Writer`s Cramp |
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23222958 |
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