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COL6A2 (collagen type VI alpha 2 chain)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1292
Gene nameGene Name - the full gene name approved by the HGNC.
Collagen type VI alpha 2 chain
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
COL6A2
SynonymsGene synonyms aliases
BTHLM1, BTHLM1B, PP3610, UCMD1, UCMD1B
ChromosomeChromosome number
21
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
21q22.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The product of this gene contains several domains similar to von Willebrand Factor type A domains. These domains have been sh
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs35887009 G>A Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant
rs61735828 G>A,C Likely-benign, uncertain-significance, benign, likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs61735832 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, synonymous variant, non coding transcript variant
rs61735833 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, non coding transcript variant
rs75581470 C>A Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022605 hsa-miR-124-3p Microarray 18668037
MIRT047536 hsa-miR-10a-5p CLASH 23622248
MIRT047410 hsa-miR-10b-5p CLASH 23622248
MIRT052889 hsa-miR-3928-3p CLASH 23622248
MIRT054732 hsa-miR-29c-3p Microarray, qRT-PCR 24590289
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 12812986
GO:0005518 Function Collagen binding IPI 18400749
GO:0005576 Component Extracellular region HDA 27068509
GO:0005576 Component Extracellular region IDA 18400749
GO:0005576 Component Extracellular region TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P12110
Protein name Collagen alpha-2(VI) chain
Protein function Collagen VI acts as a cell-binding protein.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00092 VWA
46 232
von Willebrand factor type A domain
Domain
PF01391 Collagen
254 317
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
301 369
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
409 468
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
531 590
Collagen triple helix repeat (20 copies)
Repeat
PF00092 VWA
615 798
von Willebrand factor type A domain
Domain
PF00092 VWA
833 1011
von Willebrand factor type A domain
Domain
Sequence
MLQGTCSVLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQ
SPTDILLFHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIK
NLQGISSFRRGTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERA
REEGIRLFAVAPNQNLKEQGLRDIASTPHELYRNDYATMLPDSTEIDQDTIN
RIIKVMKH
EAYGECYKVSCLEIPGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPK
GVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEA
GSPGERGDQ
GGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPK
GEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDR
GLPGPRGPQGAL
GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG
DFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLT
ECDVMTYVRE
TCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRV
GVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALKFAYDRLIKESRR
QKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHEKHESENLYSIACDKP
QQVRNMTLFSDLVAEKFI
DDMEDVLCPDPQIVCPDLPCQTELSVAQCTQRPVDIVFLLDG
SERLGEQNFHKARRFVEQVARRLTLARRDDDPLNARVALLQFGGPGEQQVAFPLSHNLTA
IHEALETTQYLNSFSHVGAGVVHAINAIVRSPRGGARRHAELSFVFLTDGVTGNDSLHES
AHSMRKQNVVPTVLALGSDVDMDVLTTLSLGDRAAVFHEKDYDSLAQPGFF
DRFIRWIC
Sequence length 1019
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  PI3K-Akt signaling pathway
Focal adhesion
ECM-receptor interaction
Cytoskeleton in muscle cells
Protein digestion and absorption
Human papillomavirus infection
  Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Arthritis Degenerative polyarthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 18784066
Bethlem myopathy BETHLEM MYOPATHY 1, BETHLEM MYOPATHY 1, AUTOSOMAL RECESSIVE, Bethlem myopathy rs121434553, rs121434555, rs139260335, rs796052093, rs796052094, rs1768488927 17785673, 17886299, 19884007, 27854218, 24038877, 8218237, 20976770, 11865138, 7695699, 23326386, 19344236, 15689448, 19949035, 19309692, 21520333, 25380242, 20576434, 25533456, 25535305, 18366090, 24801232, 21280092, 19564581, 8782832
Congenital muscular dystrophy Congenital muscular dystrophy (disorder), Congenital muscular dystrophy, Ullrich type rs1565627745, rs774985604, rs1565629479, rs121913572, rs121913575, rs121913576, rs58932704, rs58912633, rs121912495, rs121912496, rs60458016, rs387906881, rs750764003, rs387907068, rs786205117, rs387907069, rs786205118, rs267607600, rs61672878, rs57629361, rs61444459, rs60872029, rs587780362, rs141554661, rs864309525, rs371751084, rs914395925, rs1060505038, rs766046008, rs1060505039, rs750781027, rs761612652, rs1060505040, rs749383757, rs776548207, rs1554269966, rs373091820, rs1553261891, rs1474512248, rs1333100080, rs1246940477, rs1554320168, rs372328960, rs1217190017, rs750756707, rs1555894289, rs1296761337, rs1562530132, rs1569054508, rs1565622052, rs1415944134, rs1565620275, rs752436924, rs1569054086, rs1583149141, rs17854600, rs757369551, rs755438542, rs1872274494, rs1874440714
Muscular dystrophy Muscular Dystrophy rs200198778, rs121908110, rs121908185, rs58932704, rs61672878, rs60458016, rs387906881, rs397509417, rs267607644, rs267607634, rs59332535, rs797045898, rs755660222, rs142908436, rs886039913, rs138945081, rs368970223, rs746855352, rs1553264624, rs1553265433, rs1553265436, rs1553265761, rs267607576, rs780302064, rs1557058294, rs1555352706, rs961440747, rs1185491348, rs1594796439, rs1603636710
Unknown
Disease name Disease term dbSNP ID References
Amyotrophy Generalized amyotrophy, Proximal amyotrophy
Cardiovascular abnormalities Cardiovascular Abnormalities
Congenital clubfoot Congenital clubfoot
Congenital torticollis Congenital torticollis

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