COL6A2 (collagen type VI alpha 2 chain)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
1292 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Collagen type VI alpha 2 chain |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
COL6A2 |
SynonymsGene synonyms aliases
|
BTHLM1, BTHLM1B, PP3610, UCMD1, UCMD1B |
ChromosomeChromosome number
|
21 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
21q22.3 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The product of this gene contains several domains similar to von Willebrand Factor type A domains. These domains have been sh |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs35887009 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant |
rs61735828 |
G>A,C |
Likely-benign, uncertain-significance, benign, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs61735832 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, coding sequence variant, synonymous variant, non coding transcript variant |
rs61735833 |
C>T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, synonymous variant, non coding transcript variant |
rs75581470 |
C>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant, non coding transcript variant |
rs111341650 |
G>A,T |
Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, coding sequence variant, synonymous variant, non coding transcript variant |
rs113002150 |
C>T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs113525292 |
T>C,G |
Pathogenic |
Splice donor variant |
rs113828929 |
G>A,C |
Pathogenic |
Splice donor variant |
rs117725825 |
C>G,T |
Pathogenic, uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs121912940 |
G>A |
Pathogenic |
Missense variant, non coding transcript variant, coding sequence variant |
rs121912942 |
C>T |
Pathogenic |
Non coding transcript variant, coding sequence variant, stop gained |
rs138371054 |
C>G,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, non coding transcript variant, coding sequence variant |
rs138674440 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs138948335 |
G>A,T |
Pathogenic, uncertain-significance |
Missense variant, non coding transcript variant, coding sequence variant, stop gained |
rs139552940 |
G>A |
Pathogenic, uncertain-significance, likely-pathogenic |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs139571947 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Intron variant, coding sequence variant, synonymous variant |
rs140404854 |
A>G |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs140419176 |
C>A,G,T |
Benign-likely-benign, uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity |
Non coding transcript variant, coding sequence variant, synonymous variant, genic downstream transcript variant, missense variant |
rs140790797 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs140890046 |
G>A,C |
Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs140929054 |
C>T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs141021828 |
G>A,C,T |
Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs141233891 |
A>C |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs141257132 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs142021066 |
G>A,C |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs142709940 |
C>A,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs143338050 |
G>A,C |
Conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs143569686 |
C>A,T |
Conflicting-interpretations-of-pathogenicity |
Non coding transcript variant, coding sequence variant, synonymous variant, genic downstream transcript variant, missense variant |
rs143583433 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs143749884 |
G>A,C |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs144334894 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs144475977 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs145352569 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs145500808 |
C>G,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs145785230 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs146311719 |
C>T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs146323303 |
G>A |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs146420786 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs147199350 |
G>A,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs148178994 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs148249892 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs148423929 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs149077114 |
T>C |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs149480738 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs149845431 |
G>A,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs150098077 |
C>A,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs150168522 |
G>A,C |
Uncertain-significance, likely-pathogenic |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs150253422 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs150716220 |
C>A,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Non coding transcript variant, coding sequence variant, synonymous variant, genic downstream transcript variant, missense variant |
rs150877061 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs192476178 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs199499499 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs199501232 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs199513044 |
C>G |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Intron variant |
rs199929757 |
C>G,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs200585528 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs200710788 |
G>A |
Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity |
Missense variant, non coding transcript variant, coding sequence variant |
rs200797233 |
G>T |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs201426778 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs201635208 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs201854898 |
G>A,C |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs201879417 |
C>A,G,T |
Not-provided, likely-benign, conflicting-interpretations-of-pathogenicity |
Intron variant |
rs202094835 |
C>A |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs267606747 |
T>C |
Pathogenic, likely-pathogenic |
Missense variant, non coding transcript variant, coding sequence variant |
rs267606748 |
G>A |
Pathogenic, uncertain-significance |
Missense variant, non coding transcript variant, coding sequence variant |
rs267606749 |
G>A |
Pathogenic, uncertain-significance |
Missense variant, non coding transcript variant, coding sequence variant |
rs267606750 |
G>A |
Pathogenic |
Missense variant, non coding transcript variant, coding sequence variant |
rs367658663 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs368725753 |
C>G |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Intron variant |
rs369756029 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant |
rs370008311 |
T>C |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs373072443 |
C>T |
Uncertain-significance, likely-pathogenic |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs373369963 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs373635709 |
C>T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs373813975 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant |
rs374336669 |
C>G,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, non coding transcript variant, coding sequence variant |
rs374669775 |
C>A,T |
Pathogenic, likely-benign |
Synonymous variant, non coding transcript variant, coding sequence variant, stop gained |
rs374673302 |
G>A,T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, non coding transcript variant, coding sequence variant |
rs374795477 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, non coding transcript variant, coding sequence variant |
rs375288629 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs376378709 |
G>T |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs376880198 |
C>T |
Uncertain-significance, pathogenic |
Genic downstream transcript variant, missense variant, coding sequence variant, non coding transcript variant |
rs377195134 |
G>A |
Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, non coding transcript variant, 3 prime UTR variant |
rs377476546 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Coding sequence variant, non coding transcript variant, synonymous variant |
rs387906607 |
G>A |
Uncertain-significance, pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs387906608 |
C>A,G,T |
Uncertain-significance, pathogenic |
Genic downstream transcript variant, missense variant, coding sequence variant, non coding transcript variant |
rs387906609 |
C>T |
Pathogenic |
Stop gained, coding sequence variant, non coding transcript variant |
rs387906610 |
G>A |
Likely-pathogenic, pathogenic |
Genic downstream transcript variant, missense variant, coding sequence variant, non coding transcript variant |
rs397515333 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs398122821 |
TCATCG>- |
Pathogenic |
Inframe deletion, coding sequence variant, non coding transcript variant |
rs398123645 |
A>- |
Pathogenic-likely-pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs398123646 |
G>A |
Pathogenic |
Splice acceptor variant |
rs531713008 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Coding sequence variant, non coding transcript variant, synonymous variant |
rs531816975 |
C>G,T |
Likely-pathogenic, likely-benign |
Stop gained, coding sequence variant, non coding transcript variant, synonymous variant |
rs535007570 |
G>A,C |
Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant, non coding transcript variant |
rs547648292 |
G>A,T |
Likely-pathogenic, conflicting-interpretations-of-pathogenicity |
Stop gained, missense variant, coding sequence variant, non coding transcript variant |
rs563505047 |
C>T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, non coding transcript variant, synonymous variant |
rs566966690 |
G>A |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, non coding transcript variant, synonymous variant |
rs578127995 |
A>- |
Conflicting-interpretations-of-pathogenicity, likely-benign |
Intron variant |
rs727502827 |
G>A,T |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs727502828 |
G>A,C |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs727502832 |
G>T |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs727503883 |
G>A |
Uncertain-significance, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs746012569 |
C>G,T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Non coding transcript variant, synonymous variant, genic downstream transcript variant, missense variant, coding sequence variant |
rs747734639 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant |
rs747900252 |
G>A |
Pathogenic, pathogenic-likely-pathogenic, likely-benign |
Intron variant |
rs748035948 |
G>A,T |
Pathogenic |
Intron variant, splice acceptor variant |
rs748047522 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant |
rs748215430 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs749593004 |
C>T |
Pathogenic |
Stop gained, coding sequence variant, non coding transcript variant |
rs749974929 |
A>G |
Pathogenic |
Splice acceptor variant |
rs750444649 |
C>A,G,T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign |
Intron variant |
rs750842859 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs751192681 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant |
rs751409618 |
G>A,C |
Pathogenic |
Splice acceptor variant |
rs751987553 |
C>A,T |
Likely-pathogenic |
Synonymous variant, intron variant, coding sequence variant, stop gained |
rs752730608 |
A>G,T |
Pathogenic |
Stop gained, missense variant, coding sequence variant, non coding transcript variant |
rs755147431 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs759388890 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs762583937 |
CAGTGC>- |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs764014106 |
C>T |
Conflicting-interpretations-of-pathogenicity, likely-benign |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs765430501 |
G>A |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant, non coding transcript variant |
rs766157503 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs766840536 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs768836349 |
C>G,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, coding sequence variant, non coding transcript variant |
rs770842374 |
T>C |
Pathogenic, likely-pathogenic |
Splice donor variant |
rs773143298 |
C>A,G,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, coding sequence variant, non coding transcript variant |
rs773686174 |
C>G,T |
Pathogenic-likely-pathogenic |
Stop gained, missense variant, coding sequence variant, non coding transcript variant |
rs774521989 |
C>T |
Uncertain-significance, likely-pathogenic |
Genic downstream transcript variant, missense variant, coding sequence variant, non coding transcript variant |
rs774805224 |
C>T |
Conflicting-interpretations-of-pathogenicity, likely-benign |
Synonymous variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant |
rs778129335 |
AT>- |
Pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs786205642 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs794727061 |
G>A,T |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs794727419 |
C>T |
Uncertain-significance, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs794727715 |
G>A,T |
Pathogenic, likely-pathogenic |
Splice donor variant |
rs794727788 |
G>A,T |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs794727855 |
G>T |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs797045478 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs863224861 |
G>A |
Uncertain-significance, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs878854362 |
G>A,T |
Uncertain-significance, likely-pathogenic |
Synonymous variant, missense variant, coding sequence variant, non coding transcript variant |
rs886039905 |
->T |
Likely-pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs886041439 |
->C |
Pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs886041447 |
C>T |
Pathogenic |
Stop gained, coding sequence variant, non coding transcript variant |
rs886042332 |
G>A |
Pathogenic, uncertain-significance |
Missense variant, coding sequence variant, non coding transcript variant |
rs886042541 |
G>T |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886042705 |
G>A,T |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886042745 |
C>A,T |
Conflicting-interpretations-of-pathogenicity |
Intron variant |
rs886042943 |
G>A |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886043164 |
->A |
Pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs886043187 |
G>A,C |
Pathogenic |
Splice donor variant |
rs886043270 |
G>T |
Pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886043323 |
G>A,C |
Pathogenic, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886043554 |
G>A,T |
Likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886044023 |
A>G |
Pathogenic, likely-pathogenic |
Splice acceptor variant |
rs886044088 |
G>A |
Pathogenic, likely-pathogenic |
Missense variant, coding sequence variant, non coding transcript variant |
rs886044140 |
T>- |
Pathogenic |
Splice donor variant |
rs886044215 |
G>- |
Pathogenic-likely-pathogenic |
Splice donor variant, coding sequence variant, non coding transcript variant |
rs886044261 |
G>A,C |
Pathogenic |
Splice donor variant |
rs886044265 |
G>A |
Likely-pathogenic |
Splice acceptor variant |
rs886044398 |
C>- |
Pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant |
rs886044399 |
A>G |
Pathogenic |
Splice acceptor variant |
rs886044466 |
A>C |
Pathogenic |
Splice acceptor variant |
rs886044484 |
CTTTCTTCCA>- |
Pathogenic |
Intron variant, splice acceptor variant |
rs886044526 |
G>A |
Pathogenic |
Splice donor variant |
rs1012567148 |
G>A |
Uncertain-significance, likely-pathogenic |
Genic downstream transcript variant, coding sequence variant, non coding transcript variant, missense variant |
rs1057517988 |
G>A,C |
Pathogenic-likely-pathogenic, pathogenic |
Splice donor variant |
rs1057518925 |
A>G |
Pathogenic, likely-pathogenic |
Splice acceptor variant |
rs1057520717 |
G>A |
Pathogenic |
Splice donor variant |
rs1064793394 |
GA>- |
Pathogenic |
Coding sequence variant, non coding transcript variant, genic downstream transcript variant, frameshift variant |
rs1064795685 |
CG>A |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, frameshift variant |
rs1331260332 |
G>A |
Pathogenic |
Splice acceptor variant |
rs1375040481 |
ACGAC>- |
Pathogenic |
Non coding transcript variant, coding sequence variant, frameshift variant |
rs1413628703 |
->CA |
Likely-pathogenic |
Genic downstream transcript variant, non coding transcript variant, frameshift variant, coding sequence variant |
rs1427750922 |
T>C |
Likely-pathogenic |
Genic downstream transcript variant, non coding transcript variant, coding sequence variant, missense variant |
rs1487638242 |
G>C,T |
Likely-pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
rs1555871390 |
C>T |
Pathogenic |
Non coding transcript variant, stop gained, coding sequence variant |
rs1555872143 |
GTTTCAGTGCT>- |
Pathogenic |
Intron variant, non coding transcript variant, splice acceptor variant, coding sequence variant |
rs1555872200 |
CAGAAGGTAAGA>- |
Pathogenic |
Splice donor variant, non coding transcript variant, intron variant, coding sequence variant |
rs1555872819 |
G>- |
Pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
rs1555872873 |
G>A |
Pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
rs1555872965 |
G>A,T |
Pathogenic, uncertain-significance |
Non coding transcript variant, missense variant, coding sequence variant |
rs1555873084 |
A>G |
Pathogenic |
Splice acceptor variant |
rs1555873353 |
CCTTCTCCTTCAGGGCAAGCTGGGGCGCATCGGACCTCCTGGCT>- |
Likely-pathogenic |
Intron variant, non coding transcript variant, splice acceptor variant, coding sequence variant |
rs1555873356 |
A>C,G |
Pathogenic, likely-pathogenic |
Splice acceptor variant |
rs1555873358 |
G>T |
Pathogenic |
Splice acceptor variant |
rs1555873507 |
G>- |
Likely-pathogenic |
Non coding transcript variant, splice acceptor variant, coding sequence variant |
rs1555873508 |
C>- |
Pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
rs1555873698 |
->AAAAGACGTGAGGCTGATTCTGCAAACCCTTCCAGGG |
Likely-pathogenic |
Intron variant, non coding transcript variant, splice acceptor variant, coding sequence variant |
rs1555877252 |
C>T |
Likely-pathogenic |
Stop gained, non coding transcript variant, genic downstream transcript variant, coding sequence variant |
rs1555877258 |
->CTGGCCCGGAGGGACG |
Conflicting-interpretations-of-pathogenicity |
Frameshift variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant |
rs1555877282 |
T>- |
Likely-pathogenic |
Frameshift variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant |
rs1568928804 |
G>A |
Likely-pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
rs1568929639 |
CAG>AA |
Likely-pathogenic |
Intron variant, splice acceptor variant |
rs1568930426 |
GA>TT |
Uncertain-significance, likely-pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
rs1568931397 |
A>G |
Pathogenic |
Intron variant |
rs1601221868 |
G>C |
Pathogenic |
Splice acceptor variant |
rs1601231322 |
->C |
Pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
rs1601232289 |
A>G |
Likely-pathogenic |
Splice acceptor variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P12110 |
Protein name |
Collagen alpha-2(VI) chain |
Protein function |
Collagen VI acts as a cell-binding protein. |
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00092 |
VWA |
46 → 232 |
von Willebrand factor type A domain |
Domain |
PF01391 |
Collagen |
254 → 317 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
301 → 369 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
409 → 468 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
531 → 590 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF00092 |
VWA |
615 → 798 |
von Willebrand factor type A domain |
Domain |
PF00092 |
VWA |
833 → 1011 |
von Willebrand factor type A domain |
Domain |
|
Sequence |
|
Sequence length |
1019 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Arthritis |
Degenerative polyarthritis |
rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 |
18784066 |
Bethlem myopathy |
BETHLEM MYOPATHY 1, BETHLEM MYOPATHY 1, AUTOSOMAL RECESSIVE, Bethlem myopathy |
rs121434553, rs121434555, rs139260335, rs796052093, rs796052094, rs1768488927 |
17785673, 17886299, 19884007, 27854218, 24038877, 8218237, 20976770, 11865138, 7695699, 23326386, 19344236, 15689448, 19949035, 19309692, 21520333, 25380242, 20576434, 25533456, 25535305, 18366090, 24801232, 21280092, 19564581, 8782832 |
Congenital muscular dystrophy |
Congenital muscular dystrophy (disorder), Congenital muscular dystrophy, Ullrich type |
rs1565627745, rs774985604, rs1565629479, rs121913572, rs121913575, rs121913576, rs58932704, rs58912633, rs121912495, rs121912496, rs60458016, rs387906881, rs750764003, rs387907068, rs786205117, rs387907069, rs786205118, rs267607600, rs61672878, rs57629361, rs61444459, rs60872029, rs587780362, rs141554661, rs864309525, rs371751084, rs914395925, rs1060505038, rs766046008, rs1060505039, rs750781027, rs761612652, rs1060505040, rs749383757, rs776548207, rs1554269966, rs373091820, rs1553261891, rs1474512248, rs1333100080, rs1246940477, rs1554320168, rs372328960, rs1217190017, rs750756707, rs1555894289, rs1296761337, rs1562530132, rs1569054508, rs1565622052, rs1415944134, rs1565620275, rs752436924, rs1569054086, rs1583149141, rs17854600, rs757369551, rs755438542, rs1872274494, rs1874440714 |
|
Muscular dystrophy |
Muscular Dystrophy |
rs200198778, rs121908110, rs121908185, rs58932704, rs61672878, rs60458016, rs387906881, rs397509417, rs267607644, rs267607634, rs59332535, rs797045898, rs755660222, rs142908436, rs886039913, rs138945081, rs368970223, rs746855352, rs1553264624, rs1553265433, rs1553265436, rs1553265761, rs267607576, rs780302064, rs1557058294, rs1555352706, rs961440747, rs1185491348, rs1594796439, rs1603636710 |
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Myopathy |
Myopathy |
rs137854521, rs386834236, rs121908557, rs121909092, rs111033570, rs104894299, rs104894294, rs121909273, rs121909274, rs121909275, rs199474699, rs199476140, rs118192165, rs118192169, rs118192166, rs193922856, rs281865489, rs397514675, rs397514676, rs397514677, rs367543058, rs118192117, rs193922837, rs118192129, rs118192143, rs118192153, rs118192133, rs118192156, rs118192149, rs118192148, rs118192183, rs118192147, rs118192123, rs118192127, rs118192142, rs118192144, rs118192178, rs118192151, rs118192150, rs118192184, rs118192154, rs118192134, rs118192155, rs193922893, rs118192132, rs118192146, rs193922867, rs193922884, rs587777528, rs527236030, rs587777672, rs587777673, rs587777674, rs587777675, rs587783343, rs2754158, rs786204796, rs748277951, rs797046047, rs797046064, rs797046060, rs797045479, rs797045931, rs797045932, rs797045934, rs797045935, rs797045477, rs797045478, rs1057518851, rs1057518855, rs1057518773, rs1057518866, rs1555322610, rs1555806119, rs761483896, rs144071404, rs1198364572, rs1568614042, rs978984063, rs1568604308, rs1332371891, rs1601842249, rs777176261, rs1249621033, rs1278804520, rs1568613962, rs1568510406, rs1597512576, rs193922887, rs371455345, rs1603452200, rs1599634685, rs1575065895, rs1575201712, rs139715157, rs1974129338 |
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Myosclerosis |
Myosclerosis, Myosclerosis, Autosomal Recessive |
rs121912942, rs751987553 |
18852439, 11381124 |
Hypotonia |
Neonatal Hypotonia |
rs141138948, rs397517172, rs869312824, rs1583169151 |
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Scoliosis |
Scoliosis, unspecified |
rs1057518828, rs147296805, rs758163506, rs1555613564, rs1596852902, rs1596853067, rs1596853085 |
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Ullrich congenital muscular dystrophy |
Ullrich congenital muscular dystrophy 1, ULLRICH CONGENITAL MUSCULAR DYSTROPHY 1, AUTOSOMAL DOMINANT |
rs1601231322, rs748035948, rs1568931397, rs267606747, rs121912938, rs121912939, rs387906608, rs398122821, rs875989819, rs796052093, rs749974929, rs984314526, rs1582208315, rs1582196903 |
19564581, 18366090, 11381124, 15563506, 15689448 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Amyotrophy |
Generalized amyotrophy, Proximal amyotrophy |
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Cardiovascular abnormalities |
Cardiovascular Abnormalities |
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Congenital clubfoot |
Congenital clubfoot |
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Congenital torticollis |
Congenital torticollis |
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Dwarfism |
Dwarfism |
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Dysmorphic features |
Dysmorphic features |
|
18852439, 25533456, 19949035, 20976770, 24038877, 23564457, 22426012, 25204870, 15689448, 11865138 |
Elbow flexion contracture |
Flexion contracture - elbow |
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Esotropia |
Esotropia |
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Facial paralysis |
Facial paralysis |
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High palate |
Byzanthine arch palate |
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Congenital hip dislocation |
Hip Dislocation, Congenital |
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Micrognathism |
Micrognathism |
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Motor delay |
Clumsiness - motor delay |
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Osteoarthrosis deformans |
Osteoarthrosis Deformans |
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18784066 |
Phrynoderma |
Phrynoderma |
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Respiratory failure |
Respiratory Failure |
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Thoracolumbar scoliosis |
Thoracolumbar scoliosis |
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