CLCN7 (chloride voltage-gated channel 7)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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1186 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Chloride voltage-gated channel 7 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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CLCN7 |
SynonymsGene synonyms aliases
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CLC-7, CLC7, HOD, OPTA2, OPTB4, PPP1R63 |
ChromosomeChromosome number
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16 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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16p13.3 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The product of this gene belongs to the CLC chloride channel family of proteins. Chloride channels play important roles in the plasma membrane and in intracellular organelles. This gene encodes chloride channel 7. Defects in this gene are the cause of ost |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs121434432 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs121434433 |
C>G,T |
Pathogenic |
Coding sequence variant, missense variant |
rs121434434 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs121434435 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs121434436 |
T>A |
Pathogenic |
Coding sequence variant, missense variant |
rs387907576 |
T>C |
Likely-pathogenic, pathogenic |
Missense variant, coding sequence variant |
rs397515539 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs757788894 |
C>T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs760956030 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs922106856 |
C>T |
Pathogenic |
Intron variant |
rs1057517718 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs1163577336 |
C>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1322266202 |
AA>- |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs1555465963 |
A>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1567263375 |
C>A |
Pathogenic |
Splice donor variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
P51798 |
Protein name |
H(+)/Cl(-) exchange transporter 7 (Chloride channel 7 alpha subunit) (Chloride channel protein 7) (ClC-7) |
Protein function |
Slowly voltage-gated channel mediating the exchange of chloride ions against protons (PubMed:18449189, PubMed:21527911). Functions as antiporter and contributes to the acidification of the lysosome lumen and may be involved in maintaining lysoso |
PDB |
7BXU
,
7CQ5
,
7CQ6
,
7CQ7
,
7JM7
,
8HVT
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00654 |
Voltage_CLC |
185 → 596 |
Voltage gated chloride channel |
Family |
PF00571 |
CBS |
627 → 690 |
CBS domain |
Domain |
PF00571 |
CBS |
737 → 793 |
CBS domain |
Domain |
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Sequence |
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Sequence length |
805 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
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Arthritis |
Degenerative polyarthritis |
rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 |
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Craniosynostosis |
Craniosynostosis |
rs104893895, rs587777006, rs587777007, rs587777008, rs587777010, rs281865153, rs281865154, rs864321680, rs864321681, rs1057517670, rs1085307122, rs1064794325, rs1884302, rs1555750816, rs1599823350 |
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Developmental delay |
Gross motor development delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
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Hydrocephalus |
Hydrocephalus |
rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546 |
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Macrocephaly |
Macrocephaly |
rs786204854, rs764333096, rs1557739557 |
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Nystagmus |
Nystagmus |
rs137852207, rs137852208, rs1928435502, rs137852209, rs137852210, rs1929191668, rs137852211, rs137852212, rs2124209414, rs387906720, rs387906721, rs1602791884, rs786205896 |
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Optic atrophy |
Optic Atrophy |
rs121434508, rs267607017, rs80356524, rs80356525, rs879255560, rs104893753, rs80356529, rs397515360, rs104893620, rs199476104, rs199476112, rs199476118, rs398124298, rs770066665, rs398124299, rs61750185, rs672601379, rs727504060, rs786204830, rs794727804, rs199946797, rs863224127, rs863224131, rs863224134, rs863224906, rs372054380, rs886037828, rs764791523, rs145639028, rs1057519312, rs1064794257, rs1064794656, rs1064797303, rs774265764, rs760337383, rs1553784985, rs72653786, rs1555229948, rs1555119216, rs761743852, rs1553785338, rs1020764190, rs782581701, rs1560408865, rs761460379, rs773022324, rs782740998, rs1560327427, rs80356528, rs1734162973, rs1716524583, rs1057368575 |
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Osteomyelitis |
Osteomyelitis |
rs11125529, rs10936599, rs7675998, rs398652, rs755017 |
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Osteopetrosis |
Osteopetrosis, Osteopetrosis - intermediate type, Osteopetrosis, Autosomal Recessive 6, Osteopetrosis, Autosomal Recessive 4, Osteopetrosis Autosomal Dominant Type 2, Intermediate osteopetrosis |
rs786205055, rs1562370077, rs119460973, rs1554996130, rs137853149, rs751881962, rs137853150, rs137853151, rs2134438856, rs121908669, rs121908670, rs121908671, rs121908673, rs121908655, rs121908656, rs121908658, rs121908659, rs121434432, rs121434433, rs121434434, rs121434435, rs121434436, rs2137905441, rs121909072, rs863223288, rs398123011, rs387907576, rs397515539, rs267603829, rs587777490, rs139617644, rs794727287, rs573750741, rs886048594, rs777785526, rs1057517365, rs760956030, rs757788894, rs1554250938, rs367567630, rs1208311085, rs1554995350, rs1554995341, rs774308815, rs1458295257, rs1554997884, rs200851583, rs1554998061, rs758977199, rs1554999516, rs371263807, rs1475338876, rs917505107, rs1554995381, rs1554995582, rs1554995706, rs1554997818, rs1554997997, rs748659068, rs377303800, rs1554995009, rs1554999205, rs1300297240, rs1554995330, rs1385741705, rs1554995522, rs1392364437, rs749361897, rs1159666762, rs1269558164, rs1489993984, rs1439348400, rs559224144, rs1567759023, rs1567263375, rs1565156743, rs1590817956, rs1590819834, rs377215024, rs1582396088, rs1353879401, rs1590804397, rs1590819770, rs922106856, rs776436008, rs1855347940, rs761918801, rs1064794323 |
12522560, 17033731, 11207362, 14584882, 11741829, 26395888, 26477479, 19953639, 19953639, 26395888, 19288050, 14584882, 11741829 |
Pulmonary arterial hypertension |
Pulmonary arterial hypertension, Idiopathic pulmonary arterial hypertension |
rs121909288, rs137852741, rs137852742, rs137852743, rs137852744, rs137852745, rs137852746, rs137852748, rs137852749, rs137852750, rs137852751, rs137852753, rs863223423, rs863223426, rs863223424, rs863223408, rs869025366, rs876657748, rs886039506, rs886041324, rs1060502576, rs1060502581, rs1060502584, rs1085307149, rs1085307154, rs1085307157, rs1085307163, rs1085307169, rs1085307177, rs1085307180, rs1085307184, rs1085307188, rs1085307191, rs1085307203, rs1085307222, rs1085307223, rs1085307225, rs1085307229, rs1085307234, rs1085307246, rs1085307261, rs1085307267, rs576091247, rs200948870, rs1085307278, rs1085307282, rs1085307285, rs1085307290, rs1085307301, rs1085307306, rs1085307307, rs1085307308, rs1085307315, rs1085307316, rs1553509997, rs1085307324, rs1085307340, rs1085307349, rs1085307352, rs765887545, rs1085307183, rs1555208696, rs1592224412, rs1574415785, rs1574415799, rs1574462520, rs1085307197, rs1574464060, rs749485755, rs1574464121, rs1574464150, rs1574464160, rs1085307214, rs1574485996, rs1574486497, rs1574486566, rs1574488314, rs1574488346, rs1574488353, rs1574488357, rs1574488412, rs1414031345, rs1574488484, rs1574488490, rs863223419, rs1574489046, rs1574494632, rs1574494655, rs1574500018, rs1574505253, rs1574505321, rs371174955, rs1574506729, rs1574506732, rs1574506781, rs1574506790, rs1574506799, rs1574506914, rs1574506976, rs1574507076, rs1574507124, rs1574507215, rs1574507268, rs1574507272, rs1574507276, rs1574507290, rs1574507331, rs398123042, rs374644720, rs1588573831, rs1592222308, rs1592223392, rs756315327, rs1603248167, rs1397811125, rs1603255267, rs1603255327, rs1603255336, rs1603255339, rs754897911, rs1603256095, rs1085307155, rs1085307156, rs1574464226, rs1085307226, rs1574486038, rs1553508321, rs1574488277, rs1574488501, rs1574493841, rs1574499954 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Albers-schonberg osteopetrosis |
Albers-Schönberg osteopetrosis |
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Cerebellar atrophy |
Cerebellar atrophy |
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Congenital osteopetrosis |
Congenital Osteopetrosis |
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Cranial nerve paralysis |
Cranial nerve palsies |
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Dwarfism |
Dwarfism |
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Facial paralysis |
Facial paralysis |
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Frontal bossing |
Frontal bossing |
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Hypopigmentation disorder |
Hypopigmentation disorder |
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Malignant osteopetrosis |
Infantile malignant osteopetrosis, Autosomal recessive malignant osteopetrosis |
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22419446, 23877423, 20424301 |
Opsoclonus |
Opsoclonus |
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Osteoarthritis of hip |
Osteoarthritis of hip |
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Mandibular osteomyelitis |
Osteomyelitis of mandible |
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Osteosclerosis |
Osteosclerosis |
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Otitis media |
Otitis Media |
rs601338, rs1047781, rs1800028 |
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Rhinitis |
Chronic rhinitis |
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