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PDE10A (phosphodiesterase 10A)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10846
Gene nameGene Name - the full gene name approved by the HGNC.
Phosphodiesterase 10A
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
PDE10A
SynonymsGene synonyms aliases
ADSD2, HSPDE10A, IOLOD, LINC00473, PDE10A19
ChromosomeChromosome number
6
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q27
SummarySummary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene belongs to the cyclic nucleotide phosphodiesterase family. It plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides. This protein can hydrolyze both cAMP and cGMP to the co
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61733392 G>C Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs778899140 T>C Pathogenic, likely-pathogenic Non coding transcript variant, missense variant, 5 prime UTR variant, coding sequence variant
rs875989839 C>G Pathogenic 5 prime UTR variant, coding sequence variant, missense variant, non coding transcript variant
rs875989840 A>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs875989841 A>G Pathogenic 5 prime UTR variant, coding sequence variant, missense variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT521992 hsa-miR-7151-5p HITS-CLIP 21572407
MIRT509235 hsa-miR-6867-5p HITS-CLIP 21572407
MIRT509234 hsa-miR-190a-3p HITS-CLIP 21572407
MIRT509233 hsa-miR-1287-3p HITS-CLIP 21572407
MIRT509238 hsa-miR-5011-5p PAR-CLIP 20371350
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004114 Function 3',5'-cyclic-nucleotide phosphodiesterase activity IBA 21873635
GO:0004118 Function CGMP-stimulated cyclic-nucleotide phosphodiesterase activity IBA 21873635
GO:0004118 Function CGMP-stimulated cyclic-nucleotide phosphodiesterase activity IDA 19689430
GO:0005829 Component Cytosol TAS
GO:0006198 Process CAMP catabolic process IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9Y233
Protein name cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (EC 3.1.4.17)
Protein function Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides (PubMed:10373451, PubMed:10393245, PubMed:16330539, PubMed:17389385, PubMed:27058447). Can hydrolyze both cAMP and cGMP, but has higher affin
PDB 2OUN , 2OUP , 2OUQ , 2OUR , 2OUS , 2OUU , 2OUV , 2OUY , 2WEY , 2Y0J , 2ZMF , 3SN7 , 3SNI , 3SNL , 3UI7 , 3UUO , 3WI2 , 3WS8 , 3WS9 , 3WYK , 3WYL , 3WYM , 4AEL , 4AJD , 4AJF , 4AJG , 4AJM , 4BBX , 4DDL , 4DFF , 4FCB , 4FCD , 4HEU , 4HF4 , 4LKQ , 4LLJ , 4LLK , 4LLP , 4LLX , 4LM0 , 4LM1 , 4LM2 , 4LM3 , 4LM4 , 4MRW , 4MRZ , 4MS0 , 4MSA , 4MSC , 4MSE , 4MSH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01590 GAF
91 235
GAF domain
Domain
PF01590 GAF
266 412
GAF domain
Domain
PF00233 PDEase_I
514 746
Domain
Sequence
Sequence length 779
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Purine metabolism
Metabolic pathways
cAMP signaling pathway
Morphine addiction
  cGMP effects
G alpha (s) signalling events
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Dyskinesia, limb and orofacial DYSKINESIA, LIMB AND OROFACIAL, INFANTILE-ONSET rs864309484, rs796065306, rs864309483, rs797045002, rs864309515, rs1365372289, rs1553751262, rs1576526285, rs910314734, rs1576704514, rs1553726054, rs1576606182, rs1576606282 27058446, 27058447
Generalized dyskinesia with orofacial involvement Infantile-onset generalized dyskinesia with orofacial involvement rs778899140, rs875989839, rs1554258695, rs1332740547
Hyperthyroidism Hyperthyroidism rs121908861, rs121908864, rs121908874, rs121908875, rs121908876, rs121908877, rs121908873, rs121908880, rs121908883, rs121909258, rs6256, rs869312167 30367059
Unknown
Disease name Disease term dbSNP ID References
Anxiety disorder Anxiety
Benign chorea with striatal involvement Childhood-onset benign chorea with striatal involvement
Bipolar disorder Bipolar Disorder 22205951
Cardiovascular diseases Cardiovascular Diseases 30595370

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