MICU1 (mitochondrial calcium uptake 1)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
10367 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Mitochondrial calcium uptake 1 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
MICU1 |
SynonymsGene synonyms aliases
|
CALC, CBARA1, EFHA3, MPXPS, ara CALC |
ChromosomeChromosome number
|
10 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
10q22.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes an essential regulator of mitochondrial Ca2+ uptake under basal conditions. The encoded protein interacts with the mitochondrial calcium uniporter, a mitochondrial inner membrane Ca2+ channel, and is essential in preventing mitochondrial |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs369915689 |
C>T |
Pathogenic |
Splice donor variant |
rs375664373 |
C>A,G |
Likely-pathogenic |
Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant |
rs538329212 |
G>A,C,T |
Pathogenic |
Non coding transcript variant, genic upstream transcript variant, synonymous variant, coding sequence variant, stop gained, missense variant |
rs749124658 |
C>- |
Pathogenic |
Coding sequence variant, genic upstream transcript variant, frameshift variant, non coding transcript variant |
rs754639936 |
C>G,T |
Pathogenic |
Splice acceptor variant |
rs777327250 |
G>A |
Pathogenic, likely-pathogenic |
Stop gained, coding sequence variant, intron variant, non coding transcript variant, 5 prime UTR variant |
rs868338421 |
TG>- |
Pathogenic |
Coding sequence variant, intron variant, frameshift variant, non coding transcript variant, 5 prime UTR variant |
rs1135401814 |
G>A |
Pathogenic |
Stop gained, non coding transcript variant, coding sequence variant |
rs1554882874 |
A>C |
Likely-pathogenic |
Intron variant, splice donor variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0005509 |
Function |
Calcium ion binding |
IBA |
21873635 |
GO:0005509 |
Function |
Calcium ion binding |
IDA |
23101630, 24514027 |
GO:0005509 |
Function |
Calcium ion binding |
TAS |
26975899 |
GO:0005515 |
Function |
Protein binding |
IPI |
21685886, 23101630, 23178883, 24430870, 24560927, 26387864, 27099988, 32494073 |
GO:0005622 |
Component |
Intracellular anatomical structure |
TAS |
9806765 |
GO:0005739 |
Component |
Mitochondrion |
IDA |
|
GO:0005739 |
Component |
Mitochondrion |
TAS |
26975899 |
GO:0005743 |
Component |
Mitochondrial inner membrane |
IDA |
20693986 |
GO:0005743 |
Component |
Mitochondrial inner membrane |
IMP |
27099988 |
GO:0005743 |
Component |
Mitochondrial inner membrane |
TAS |
|
GO:0005758 |
Component |
Mitochondrial intermembrane space |
IDA |
24231807, 24560927 |
GO:0006851 |
Process |
Mitochondrial calcium ion transmembrane transport |
IDA |
24560927 |
GO:0006851 |
Process |
Mitochondrial calcium ion transmembrane transport |
IMP |
23101630, 27099988 |
GO:0006851 |
Process |
Mitochondrial calcium ion transmembrane transport |
TAS |
|
GO:0006952 |
Process |
Defense response |
TAS |
9806765 |
GO:0032592 |
Component |
Integral component of mitochondrial membrane |
IDA |
23101630 |
GO:0034704 |
Component |
Calcium channel complex |
ISS |
|
GO:0036444 |
Process |
Calcium import into the mitochondrion |
IBA |
21873635 |
GO:0036444 |
Process |
Calcium import into the mitochondrion |
IMP |
26903221 |
GO:0042802 |
Function |
Identical protein binding |
IPI |
24514027 |
GO:0046982 |
Function |
Protein heterodimerization activity |
IPI |
24560927, 26387864 |
GO:0051260 |
Process |
Protein homooligomerization |
IDA |
24514027 |
GO:0051560 |
Process |
Mitochondrial calcium ion homeostasis |
IBA |
21873635 |
GO:0051560 |
Process |
Mitochondrial calcium ion homeostasis |
IMP |
20693986, 23101630, 26903221, 27099988 |
GO:0051561 |
Process |
Positive regulation of mitochondrial calcium ion concentration |
IDA |
24560927 |
GO:0051561 |
Process |
Positive regulation of mitochondrial calcium ion concentration |
IMP |
26975899 |
GO:0070509 |
Process |
Calcium ion import |
IDA |
20693986 |
GO:1900069 |
Process |
Regulation of cellular hyperosmotic salinity response |
IMP |
26975899 |
GO:1990246 |
Component |
Uniplex complex |
IBA |
21873635 |
GO:1990246 |
Component |
Uniplex complex |
IDA |
24231807, 24560927 |
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
Q9BPX6 |
Protein name |
Calcium uptake protein 1, mitochondrial (Atopy-related autoantigen CALC) (ara CALC) (Calcium-binding atopy-related autoantigen 1) (allergen Hom s 4) |
Protein function |
Calcium sensor of the mitochondrial calcium uniporter (MCU) channel, which senses calcium level via its EF-hand domains (PubMed:20693986, PubMed:23101630, PubMed:23747253, PubMed:24313810, PubMed:24332854, PubMed:24503055, PubMed:24560927, PubMe |
PDB |
4NSC
,
4NSD
,
6K7Y
,
6LB7
,
6LB8
,
6LE5
,
6WDN
,
6WDO
,
6XJV
,
6XJX
,
6XQN
,
6XQO
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF13202 |
EF-hand_5 |
223 → 247 |
EF hand |
Domain |
|
Sequence |
MFRLNSLSALAELAVGSRWYHGGSQPIQIRRRLMMVAFLGASAVTASTGLLWKRAHAESP PCVDNLKSDIGDKGKNKDEGDVCNHEKKTADLAPHPEEKKKKRSGFRDRKVMEYENRIRA YSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDGKK ISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDM EEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGLCSALTTYFFGADLKGKLTIKNFLEFQ RKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLT FQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALF DCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ
|
|
Sequence length |
476 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
|
|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Developmental delay |
Global developmental delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
|
Microcephaly |
Microcephaly |
rs397704721, rs267607176, rs267607177, rs397704725, rs267606717, rs267606718, rs199422202, rs121434311, rs199422203, rs199422126, rs387906274, rs121434305, rs199422125, rs199422135, rs189678019, rs199422184, rs137852994, rs137852995, rs137852996, rs137852997, rs145489194, rs80338860, rs137852494, rs121918609, rs199422207, rs199422206, rs29001566, rs864321658, rs199422138, rs199422139, rs199422141, rs199422144, rs199422147, rs199422151, rs199422152, rs199422153, rs199422157, rs199422159, rs199422160, rs199422161, rs140602858, rs199422164, rs199422165, rs148294838, rs199422134, rs199422168, rs199422172, rs199422173, rs199422131, rs199422177, rs199422180, rs199422185, rs199422186, rs199422187, rs143931757, rs199422189, rs199422192, rs199422194, rs199422195, rs199422196, rs199422197, rs199422199, rs753597039, rs1488084787, rs387906961, rs755862917, rs387907082, rs587776899, rs387907083, rs587776900, rs587776901, rs387907084, rs863223322, rs764201220, rs202247811, rs763915472, rs587776986, rs587777036, rs398122971, rs374351172, rs373278668, rs398122976, rs121909123, rs587783393, rs730882076, rs587783211, rs144716013, rs606231255, rs587783215, rs587783216, rs587783220, rs587783221, rs587783225, rs587783227, rs587783228, rs587783230, rs587783238, rs587783239, rs587783240, rs587783245, rs587783247, rs587783248, rs587783258, rs587783259, rs587783263, rs587783265, rs587783268, rs587783269, rs587783272, rs587783275, rs587783277, rs587783278, rs587783280, rs587783282, rs587783283, rs587783285, rs587783287, rs587783288, rs587783289, rs587783292, rs587783295, rs587784452, rs587783741, rs587783735, rs587783392, rs587783390, rs587783387, rs587783410, rs202058504, rs587783423, rs587783421, rs587783414, rs587784553, rs587784558, rs587784546, rs587784549, rs587784554, rs587784412, rs876661307, rs869025200, rs747831095, rs748529285, rs797045316, rs797045315, rs797045314, rs759632528, rs797045313, rs797045311, rs754282058, rs797045441, rs797045454, rs797045430, rs869312853, rs797046109, rs767399782, rs863225127, rs863225464, rs863225465, rs780270096, rs864321621, rs864321620, rs775277800, rs879253817, rs869312824, rs761447719, rs753406334, rs147622433, rs199422137, rs879255522, rs879255524, rs879255523, rs886037892, rs886037893, rs886037894, rs886037895, rs199422169, rs886041709, rs886041282, rs138228629, rs759188041, rs769688376, rs1057517688, rs1057519087, rs1057518268, rs933106143, rs201362977, rs754909135, rs1057520873, rs1060499758, rs1060499757, rs199422146, rs748016594, rs1085307120, rs763715733, rs1064795945, rs763800571, rs1554728351, rs1553227021, rs555866170, rs1553895368, rs1334947797, rs769818500, rs1321892596, rs1553227645, rs1404276011, rs1553228275, rs1554471681, rs1554496609, rs1555420891, rs1555418825, rs587784548, rs1555723585, rs199736219, rs745997770, rs765275884, rs1553924800, rs1554730137, rs1229568621, rs1482100822, rs979186313, rs758157294, rs1555294652, rs1555299107, rs1553264033, rs1553259539, rs1553254322, rs1553259528, rs981349334, rs1553264036, rs1553253022, rs754267846, rs776034810, rs1342429887, rs752140135, rs1006898944, rs571640983, rs1477524771, rs763909256, rs199910503, rs1553223496, rs759663956, rs1553446603, rs1555139372, rs1555143325, rs1350194762, rs1555141158, rs1553225179, rs769481947, rs769364943, rs748011724, rs1334301723, rs746341112, rs149225624, rs765113367, rs1567024512, rs142865061, rs772050241, rs201721894, rs1557966012, rs1379578836, rs1568334868, rs1185537869, rs1602333390, rs1163303148, rs774338373, rs770540184, rs1571600045, rs1571601267, rs1571602991, rs1588472215, rs1599841026, rs1558328287, rs1571600860, rs1571596976, rs1309880692, rs1435239428, rs1588634016, rs1751797979, rs1810830776, rs1815354949, rs1949984655, rs886039658, rs1943461045, rs777711720, rs2031759596, rs1555710223, rs1221031683, rs774069989, rs2058919680, rs1170413397, rs1213710245, rs1599851667, rs1599760058, rs1971033478, rs746967357 |
|
Myopathy |
Myopathy |
rs137854521, rs386834236, rs121908557, rs121909092, rs111033570, rs104894299, rs104894294, rs121909273, rs121909274, rs121909275, rs199474699, rs199476140, rs118192165, rs118192169, rs118192166, rs193922856, rs281865489, rs397514675, rs397514676, rs397514677, rs367543058, rs118192117, rs193922837, rs118192129, rs118192143, rs118192153, rs118192133, rs118192156, rs118192149, rs118192148, rs118192183, rs118192147, rs118192123, rs118192127, rs118192142, rs118192144, rs118192178, rs118192151, rs118192150, rs118192184, rs118192154, rs118192134, rs118192155, rs193922893, rs118192132, rs118192146, rs193922867, rs193922884, rs587777528, rs527236030, rs587777672, rs587777673, rs587777674, rs587777675, rs587783343, rs2754158, rs786204796, rs748277951, rs797046047, rs797046064, rs797046060, rs797045479, rs797045931, rs797045932, rs797045934, rs797045935, rs797045477, rs797045478, rs1057518851, rs1057518855, rs1057518773, rs1057518866, rs1555322610, rs1555806119, rs761483896, rs144071404, rs1198364572, rs1568614042, rs978984063, rs1568604308, rs1332371891, rs1601842249, rs777176261, rs1249621033, rs1278804520, rs1568613962, rs1568510406, rs1597512576, rs193922887, rs371455345, rs1603452200, rs1599634685, rs1575065895, rs1575201712, rs139715157, rs1974129338 |
24336167 |
Optic atrophy |
Optic Atrophy |
rs121434508, rs267607017, rs80356524, rs80356525, rs879255560, rs104893753, rs80356529, rs397515360, rs104893620, rs199476104, rs199476112, rs199476118, rs398124298, rs770066665, rs398124299, rs61750185, rs672601379, rs727504060, rs786204830, rs794727804, rs199946797, rs863224127, rs863224131, rs863224134, rs863224906, rs372054380, rs886037828, rs764791523, rs145639028, rs1057519312, rs1064794257, rs1064794656, rs1064797303, rs774265764, rs760337383, rs1553784985, rs72653786, rs1555229948, rs1555119216, rs761743852, rs1553785338, rs1020764190, rs782581701, rs1560408865, rs761460379, rs773022324, rs782740998, rs1560327427, rs80356528, rs1734162973, rs1716524583, rs1057368575 |
|
Proximal myopathy with extrapyramidal signs |
Proximal myopathy with extrapyramidal signs |
rs754639936, rs369915689, rs375664373, rs1135401814, rs749124658, rs538329212 |
|
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Basal ganglia diseases |
Basal Ganglia Diseases |
|
24336167 |
Extrapyramidal disease |
Extrapyramidal Disorders |
|
24336167 |
Learning disorders |
Learning Disorders, Adult Learning Disorders, Learning Disturbance, Learning Disabilities |
|
24336167 |
Lenticulostriate disorders |
Lenticulostriate Disorders |
|
24336167 |
Orofacial dyskinesia |
Lingual-Facial-Buccal Dyskinesia |
|
|
Motor delay |
Clumsiness - motor delay |
|
|
Movement disorders |
Movement Disorders |
|
24336167 |
Myopathy with extrapyramidal signs |
MYOPATHY WITH EXTRAPYRAMIDAL SIGNS |
|
24336167, 29721912 |
Peripheral axonal neuropathy |
Peripheral axonal neuropathy |
rs202219507, rs529035174, rs758974790, rs70983380, rs761291489, rs1579721449, rs1572614757, rs777077185 |
|
Ptosis |
Blepharoptosis, Ptosis |
rs139920573 |
|
Specific learning disorder |
Specific learning disability |
rs1057519497 |
|
Status marmoratus |
Etat Marbre |
|
24336167 |
|
|
|