TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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10312 |
Gene nameGene Name - the full gene name approved by the HGNC.
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T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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TCIRG1 |
SynonymsGene synonyms aliases
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ATP6N1C, ATP6V0A3, Atp6i, OC-116kDa, OC116, OPTB1, Stv1, TIRC7, Vph1, a3 |
ChromosomeChromosome number
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11 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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11q13.2 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This gene encodes a subunit of a large protein complex known as a vacuolar H+-ATPase (V-ATPase). The protein complex acts as a pump to move protons across the membrane. This movement of protons helps regulate the pH of cells and their surrounding environm |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs137853149 |
C>A |
Pathogenic |
Coding sequence variant, stop gained, non coding transcript variant, missense variant |
rs137853150 |
G>A,C |
Pathogenic-likely-pathogenic, pathogenic |
Coding sequence variant, non coding transcript variant, missense variant |
rs137853151 |
G>A,T |
Pathogenic |
Coding sequence variant, synonymous variant, non coding transcript variant, missense variant |
rs138527421 |
A>G |
Conflicting-interpretations-of-pathogenicity, uncertain-significance |
Coding sequence variant, synonymous variant, non coding transcript variant, missense variant |
rs139617644 |
G>A |
Pathogenic |
Splice acceptor variant |
rs140963213 |
G>A |
Conflicting-interpretations-of-pathogenicity, uncertain-significance |
Coding sequence variant, non coding transcript variant, missense variant |
rs141356870 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Coding sequence variant, genic downstream transcript variant, non coding transcript variant, synonymous variant |
rs141859450 |
C>T |
Conflicting-interpretations-of-pathogenicity, uncertain-significance |
Synonymous variant, upstream transcript variant, coding sequence variant, genic upstream transcript variant, 5 prime UTR variant, non coding transcript variant |
rs142539969 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Coding sequence variant, non coding transcript variant, missense variant |
rs145080707 |
C>T |
Conflicting-interpretations-of-pathogenicity, uncertain-significance |
Coding sequence variant, synonymous variant, non coding transcript variant, missense variant |
rs145144233 |
C>G,T |
Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance |
Coding sequence variant, synonymous variant, non coding transcript variant |
rs145718040 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, synonymous variant, downstream transcript variant, coding sequence variant, non coding transcript variant |
rs150788130 |
C>A,T |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, intron variant, synonymous variant, coding sequence variant, non coding transcript variant |
rs151180675 |
C>T |
Uncertain-significance, conflicting-interpretations-of-pathogenicity |
Non coding transcript variant, synonymous variant, missense variant, coding sequence variant |
rs183885218 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Upstream transcript variant, intron variant, genic upstream transcript variant |
rs371263807 |
C>A,T |
Pathogenic |
Stop gained, genic downstream transcript variant, non coding transcript variant, coding sequence variant, downstream transcript variant, synonymous variant |
rs377303800 |
G>A |
Likely-pathogenic, conflicting-interpretations-of-pathogenicity |
Upstream transcript variant, splice donor variant, genic upstream transcript variant |
rs377606178 |
C>G,T |
Conflicting-interpretations-of-pathogenicity |
Genic downstream transcript variant, downstream transcript variant, intron variant |
rs587779413 |
C>A |
Pathogenic, uncertain-significance |
Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant, downstream transcript variant |
rs745971874 |
G>A |
Pathogenic |
Synonymous variant, coding sequence variant, non coding transcript variant |
rs748659068 |
C>T |
Pathogenic |
Stop gained, genic downstream transcript variant, coding sequence variant, non coding transcript variant |
rs751881962 |
A>C,T |
Pathogenic, likely-pathogenic |
Intron variant, upstream transcript variant, genic upstream transcript variant |
rs758977199 |
A>C,T |
Likely-pathogenic |
Splice acceptor variant |
rs777785526 |
C>T |
Conflicting-interpretations-of-pathogenicity |
Stop gained, missense variant, non coding transcript variant, coding sequence variant |
rs886048594 |
GGAGCGC>- |
Conflicting-interpretations-of-pathogenicity |
Upstream transcript variant, genic upstream transcript variant, frameshift variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant |
rs917505107 |
G>A,T |
Likely-pathogenic |
Splice donor variant, upstream transcript variant, genic upstream transcript variant |
rs1057517365 |
G>A |
Likely-pathogenic |
Non coding transcript variant, stop gained, coding sequence variant |
rs1208311085 |
CCCC>-,CCC |
Likely-pathogenic |
5 prime UTR variant, non coding transcript variant, coding sequence variant, upstream transcript variant, frameshift variant, genic upstream transcript variant |
rs1300297240 |
G>- |
Pathogenic, likely-pathogenic |
Frameshift variant, coding sequence variant, non coding transcript variant, 3 prime UTR variant |
rs1338631330 |
C>T |
Likely-pathogenic, pathogenic |
Coding sequence variant, genic upstream transcript variant, 5 prime UTR variant, non coding transcript variant, stop gained, upstream transcript variant |
rs1439348400 |
G>T |
Likely-pathogenic |
Splice donor variant |
rs1475338876 |
G>A |
Pathogenic |
Splice donor variant, genic downstream transcript variant |
rs1489993984 |
C>T |
Pathogenic |
Coding sequence variant, non coding transcript variant, missense variant, stop gained |
rs1554995009 |
C>T |
Likely-pathogenic |
5 prime UTR variant, stop gained, coding sequence variant, upstream transcript variant, non coding transcript variant, genic upstream transcript variant |
rs1554995115 |
C>T |
Pathogenic |
5 prime UTR variant, stop gained, coding sequence variant, upstream transcript variant, non coding transcript variant, genic upstream transcript variant |
rs1554997818 |
T>C |
Likely-pathogenic |
Splice donor variant |
rs1554997884 |
G>A |
Likely-pathogenic |
Splice acceptor variant |
rs1554997997 |
->A |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, frameshift variant |
rs1554998061 |
->GCCG |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, frameshift variant |
rs1554999205 |
G>C |
Likely-pathogenic |
Non coding transcript variant, splice donor variant |
rs1554999516 |
->AG |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, frameshift variant, 3 prime UTR variant |
rs1554999769 |
->C |
Likely-pathogenic |
Coding sequence variant, downstream transcript variant, non coding transcript variant, frameshift variant, genic downstream transcript variant |
rs1555000376 |
A>G |
Likely-pathogenic |
Splice acceptor variant, intron variant, genic downstream transcript variant |
rs1590817956 |
G>A |
Pathogenic |
Genic downstream transcript variant, downstream transcript variant, non coding transcript variant, coding sequence variant, stop gained |
rs1590819770 |
G>C |
Likely-pathogenic |
Splice acceptor variant, genic downstream transcript variant, intron variant |
rs1590819834 |
->G |
Likely-pathogenic |
Genic downstream transcript variant, non coding transcript variant, coding sequence variant, frameshift variant, intron variant |
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
Q13488 |
Protein name |
V-type proton ATPase 116 kDa subunit a 3 (V-ATPase 116 kDa subunit a 3) (Osteoclastic proton pump 116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune regulator 1) (T-cell immune response cDNA7 protein) (TIRC7) (Vacuolar proton translocating ATPase 116 kD |
Protein function |
Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (By similarity). V-ATPase is responsible |
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF01496 |
V_ATPase_I |
27 → 825 |
V-type ATPase 116kDa subunit family |
Family |
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Sequence |
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Sequence length |
830 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
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Aplastic anemia |
Aplastic Anemia |
rs113993991, rs113993993, rs864309668, rs121908974, rs199422265, rs199422270, rs104894176, rs104894180, rs28933973, rs104894182, rs28933376, rs771552960, rs786205093, rs193302876, rs113993992, rs113993994, rs113993998, rs199422298, rs199422305, rs199422273, rs199422275, rs199422276, rs199422259, rs199422279, rs199422280, rs199422281, rs199422283, rs587780100, rs587781305, rs587781891, rs587781969, rs587782130, rs587782545, rs730881864, rs730881857, rs730881850, rs730881839, rs142301194, rs786201745, rs764884516, rs786202490, rs768378152, rs574673404, rs767215758, rs786205135, rs762664474, rs751161742, rs373730800, rs864622143, rs864622090, rs864622511, rs864622253, rs786201965, rs756363734, rs766044684, rs876659521, rs876659592, rs113993990, rs751247865, rs1057517262, rs1057516668, rs1057516611, rs1057516320, rs1057516772, rs931715719, rs767454740, rs1057519587, rs1060503483, rs1060503467, rs1064795816, rs1064793210, rs1131691842, rs772797192, rs751567476, rs780235686, rs1554562083, rs578092914, rs147035858, rs189650890, rs759232053, rs1554558613, rs1554567892, rs1554564297, rs1554558472, rs1554559083, rs1349928568, rs1178384498, rs1198614767, rs1554558449, rs1554568427, rs752858869, rs147462227, rs748513310, rs1238152597, rs760237820, rs1554562110, rs750375741, rs758708229, rs768849283, rs1563578540, rs1563526747, rs1563559078, rs772005832, rs1563539146, rs778306619, rs771475965, rs1586052851, rs1554559094, rs776571416, rs200430442, rs776299562, rs1584439050, rs1586075907, rs1586101154, rs1586059584, rs1586088924, rs1810540992, rs772411713, rs1812023981 |
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Congenital neutropenia |
Congenital neutropenia, Autosomal dominant severe congenital neutropenia |
rs118203968, rs118203969, rs118203970, rs118203971, rs267606834, rs28936381, rs137854447, rs137854448, rs137854450, rs28931611, rs137854451, rs200478425, rs587777730, rs606231474, rs606231475, rs606231473, rs775224457, rs769441127, rs148559256, rs797044567, rs796065343, rs797045009, rs878855315, rs1555710005, rs879253750, rs879253882, rs1555354200, rs1555354198, rs1555354750, rs890101650, rs759302795, rs57246956, rs138156467, rs1194477276, rs1570588220, rs757401069, rs745582203, rs1191239079, rs1597905369, rs1599294750, rs1594996301, rs1595004126, rs1595004676, rs756667927, rs34019455 |
24753205 |
Craniosynostosis |
Craniosynostosis |
rs104893895, rs587777006, rs587777007, rs587777008, rs587777010, rs281865153, rs281865154, rs864321680, rs864321681, rs1057517670, rs1085307122, rs1064794325, rs1884302, rs1555750816, rs1599823350 |
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Hemangioma |
Hemangioma |
rs119475040, rs121917766 |
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Hydrocephalus |
Hydrocephalus |
rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546 |
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Leukemia |
Leukemia, Myelocytic, Acute |
rs121909646, rs121913488, rs587776834, rs752746786, rs869312821, rs767454740, rs1554564297, rs11978267, rs4132601 |
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Lymphoblastic leukemia |
Precursor Cell Lymphoblastic Leukemia Lymphoma |
rs387906351, rs104894562, rs398122513, rs398122840, rs398123063, rs1057524466, rs1064796115, rs1064795660, rs1064793129, rs1064796227, rs1567887558, rs1161194345, rs1597558200, rs1406320425, rs1597566470, rs1597566699, rs1597567692, rs1597567985, rs1438890364, rs1288977950, rs1597552140, rs1597566356, rs1597566726, rs1597568117, rs2069719445, rs2069729948, rs2070018439, rs745708044, rs1169577591 |
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Macrocephaly |
Macrocephaly |
rs786204854, rs764333096, rs1557739557 |
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Myelodysplasia |
Myelodysplasia |
rs141601766, rs1261178797 |
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Myelodysplastic syndrome |
MYELODYSPLASTIC SYNDROME |
rs193303018, rs387906631, rs1576745225, rs373145711, rs752746786, rs377023736, rs373221034, rs1576749014, rs1600586587 |
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Neutropenia |
Neutropenia, Neutropenia, Severe Congenital, Autosomal Dominant 1 |
rs879253882 |
24753205 |
Nystagmus |
Nystagmus |
rs137852207, rs137852208, rs1928435502, rs137852209, rs137852210, rs1929191668, rs137852211, rs137852212, rs2124209414, rs387906720, rs387906721, rs1602791884, rs786205896 |
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Optic atrophy |
Optic Atrophy |
rs121434508, rs267607017, rs80356524, rs80356525, rs879255560, rs104893753, rs80356529, rs397515360, rs104893620, rs199476104, rs199476112, rs199476118, rs398124298, rs770066665, rs398124299, rs61750185, rs672601379, rs727504060, rs786204830, rs794727804, rs199946797, rs863224127, rs863224131, rs863224134, rs863224906, rs372054380, rs886037828, rs764791523, rs145639028, rs1057519312, rs1064794257, rs1064794656, rs1064797303, rs774265764, rs760337383, rs1553784985, rs72653786, rs1555229948, rs1555119216, rs761743852, rs1553785338, rs1020764190, rs782581701, rs1560408865, rs761460379, rs773022324, rs782740998, rs1560327427, rs80356528, rs1734162973, rs1716524583, rs1057368575 |
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Osteomyelitis |
Osteomyelitis |
rs11125529, rs10936599, rs7675998, rs398652, rs755017 |
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Osteopetrosis |
Osteopetrosis, Osteopetrosis - intermediate type, Osteopetrosis, Autosomal Recessive 1, Osteopetrosis, Autosomal Recessive 6, Intermediate osteopetrosis |
rs786205055, rs1562370077, rs119460973, rs1554996130, rs137853149, rs751881962, rs137853150, rs137853151, rs2134438856, rs121908669, rs121908670, rs121908671, rs121908673, rs121908655, rs121908656, rs121908658, rs121908659, rs121434432, rs121434433, rs121434434, rs121434435, rs121434436, rs2137905441, rs121909072, rs863223288, rs398123011, rs387907576, rs397515539, rs267603829, rs587777490, rs139617644, rs794727287, rs573750741, rs886048594, rs777785526, rs1057517365, rs760956030, rs757788894, rs1554250938, rs367567630, rs1208311085, rs1554995350, rs1554995341, rs774308815, rs1458295257, rs1554997884, rs200851583, rs1554998061, rs758977199, rs1554999516, rs371263807, rs1475338876, rs917505107, rs1554995381, rs1554995582, rs1554995706, rs1554997818, rs1554997997, rs748659068, rs377303800, rs1554995009, rs1554999205, rs1300297240, rs1554995330, rs1385741705, rs1554995522, rs1392364437, rs749361897, rs1159666762, rs1269558164, rs1489993984, rs1439348400, rs559224144, rs1567759023, rs1567263375, rs1565156743, rs1590817956, rs1590819834, rs377215024, rs1582396088, rs1353879401, rs1590804397, rs1590819770, rs922106856, rs776436008, rs1855347940, rs761918801, rs1064794323 |
24535816, 25829125, 11532986, 24989235, 23721911, 22231430, 25018813, 24101165, 15300850, 12552563, 18715141, 25525159, 12507890, 21042819, 10942435, 10888887, 25829125, 19507210, 24535484, 26777052 |
Pancytopenia |
Pancytopenia |
rs869312883, rs770551610, rs1131690788, rs530073586, rs374333820 |
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Periodontitis |
Periodontitis |
rs28937571, rs104894211, rs587777534 |
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Pulmonary arterial hypertension |
Pulmonary arterial hypertension, Idiopathic pulmonary arterial hypertension |
rs121909288, rs137852741, rs137852742, rs137852743, rs137852744, rs137852745, rs137852746, rs137852748, rs137852749, rs137852750, rs137852751, rs137852753, rs863223423, rs863223426, rs863223424, rs863223408, rs869025366, rs876657748, rs886039506, rs886041324, rs1060502576, rs1060502581, rs1060502584, rs1085307149, rs1085307154, rs1085307157, rs1085307163, rs1085307169, rs1085307177, rs1085307180, rs1085307184, rs1085307188, rs1085307191, rs1085307203, rs1085307222, rs1085307223, rs1085307225, rs1085307229, rs1085307234, rs1085307246, rs1085307261, rs1085307267, rs576091247, rs200948870, rs1085307278, rs1085307282, rs1085307285, rs1085307290, rs1085307301, rs1085307306, rs1085307307, rs1085307308, rs1085307315, rs1085307316, rs1553509997, rs1085307324, rs1085307340, rs1085307349, rs1085307352, rs765887545, rs1085307183, rs1555208696, rs1592224412, rs1574415785, rs1574415799, rs1574462520, rs1085307197, rs1574464060, rs749485755, rs1574464121, rs1574464150, rs1574464160, rs1085307214, rs1574485996, rs1574486497, rs1574486566, rs1574488314, rs1574488346, rs1574488353, rs1574488357, rs1574488412, rs1414031345, rs1574488484, rs1574488490, rs863223419, rs1574489046, rs1574494632, rs1574494655, rs1574500018, rs1574505253, rs1574505321, rs371174955, rs1574506729, rs1574506732, rs1574506781, rs1574506790, rs1574506799, rs1574506914, rs1574506976, rs1574507076, rs1574507124, rs1574507215, rs1574507268, rs1574507272, rs1574507276, rs1574507290, rs1574507331, rs398123042, rs374644720, rs1588573831, rs1592222308, rs1592223392, rs756315327, rs1603248167, rs1397811125, rs1603255267, rs1603255327, rs1603255336, rs1603255339, rs754897911, rs1603256095, rs1085307155, rs1085307156, rs1574464226, rs1085307226, rs1574486038, rs1553508321, rs1574488277, rs1574488501, rs1574493841, rs1574499954 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Albers-schonberg osteopetrosis |
Albers-Schonberg Disease, Autosomal Recessive |
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Aphthous ulcer |
Recurrent aphthous ulcer |
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Cranial nerve paralysis |
Cranial nerve palsies |
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Dysosteosclerosis |
Dysosteosclerosis |
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Eosinophilia |
Eosinophilia |
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Facial paralysis |
Facial paralysis |
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Frontal bossing |
Frontal bossing |
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Gingivitis |
Gingivitis |
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Lymphopenia |
Lymphopenia |
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Malignant osteopetrosis |
Infantile malignant osteopetrosis, Autosomal recessive malignant osteopetrosis |
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20424301, 15300850, 23877423, 21042819 |
Monocytosis |
Monocytosis |
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Opsoclonus |
Opsoclonus |
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Oral ulcer |
Oral Ulcer |
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Osteopenia |
Osteopenia |
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Otitis media |
Otitis Media |
rs601338, rs1047781, rs1800028 |
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Pharyngitis |
Pharyngitis |
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Pyoderma gangrenosum |
Pyoderma Gangrenosum |
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Rhinitis |
Chronic rhinitis, Rhinitis |
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