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CDH11 (cadherin 11)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1009
Gene nameGene Name - the full gene name approved by the HGNC.
Cadherin 11
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
CDH11
SynonymsGene synonyms aliases
CAD11, CDHOB, ESWS, OB, OSF-4, TBHS2
ChromosomeChromosome number
16
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16q21
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a type II classical cadherin from the cadherin superfamily, integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1555514463 AG>CTGATGATC Pathogenic Frameshift variant, coding sequence variant
rs1555515331 C>A Pathogenic Splice donor variant
rs1555515924 G>C Pathogenic Stop gained, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018564 hsa-miR-335-5p Microarray 18185580
MIRT022977 hsa-miR-124-3p Microarray 18668037
MIRT054102 hsa-miR-200c-3p Immunohistochemistry, Luciferase reporter assay, Microarray, QRTPCR 23497265
MIRT732299 hsa-miR-27b-3p Luciferase reporter assay, qRT-PCR, Western blot 26706910
MIRT732299 hsa-miR-27b-3p Luciferase reporter assay, qRT-PCR, Western blot 26706910
Transcription factors
Transcription factor Regulation Reference
AR Unknown 20191612
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IBA 21873635
GO:0001501 Process Skeletal system development TAS 8163513
GO:0001503 Process Ossification NAS 8163513
GO:0005509 Function Calcium ion binding IBA 21873635
GO:0005737 Component Cytoplasm IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P55287
Protein name Cadherin-11 (OSF-4) (Osteoblast cadherin) (OB-cadherin)
Protein function Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. Required for proper focal
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin
59 150
Cadherin domain
Domain
PF00028 Cadherin
164 259
Cadherin domain
Domain
PF00028 Cadherin
273 375
Cadherin domain
Domain
PF00028 Cadherin
388 479
Cadherin domain
Domain
PF01049 Cadherin_C
641 789
Cadherin cytoplasmic region
Family
Sequence
Sequence length 796
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
Reactome
    Adherens junctions interactions
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Chronic obstructive pulmonary disease Chronic Obstructive Airway Disease rs2227956, rs1008438, rs1043618, rs562047, rs1061581, rs2763979, rs6457452, rs13147758, rs1828591, rs13118928 30940143
Craniosynostosis Craniosynostosis rs104893895, rs587777006, rs587777007, rs587777008, rs587777010, rs281865153, rs281865154, rs864321680, rs864321681, rs1057517670, rs1085307122, rs1064794325, rs1884302, rs1555750816, rs1599823350
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Amelia Amelia involving the lower limbs
Bladder exstrophy Bladder Exstrophy rs760064852, rs751444145
Blepharochalasis Blepharochalasis
Brachioskeletogenital syndrome Branchio-skeleto-genital syndrome 29271567, 28988429

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