# GeDiPNet Shared-Gene Disease Pairs -- generated 2026-10-20 03:59:13
# Similarity: Jaccard index on shared curated genes (disease_gdp). Significance: upper-tail hypergeometric test (P(X>=k)), Benjamini-Hochberg FDR-corrected across all tested pairs. Corroborated Shared Genes: count of shared genes backed by >=2 distinct disease_gdp.main_source values combined across both diseases (e.g. GWAS-backed for one, ClinVar-backed for the other still counts); Shared Gene Names lists each gene's own source count in parentheses. Overlap Coefficient: shared genes / MIN(each disease's own total gene count) -- complements the Jaccard-based Similarity Score by showing how much of the SMALLER disease's entire known gene-set is covered by this pair, which Jaccard (dividing by the union) can understate. Shared Cluster: cluster id if both diseases fall in the same label-propagation cluster (scripts/build_disease_clusters.php), blank otherwise. See scripts/build_related.php on gedipnet.bicnirrh.res.in. Data as of: 2026-10-20 03:00:20. Filters applied: disease name contains "Epileptic encephalopathy, early infantile, 30" (5 matching pairs).
Disease A	Disease B	Shared Genes	Corroborated Shared Genes	Shared Gene Names	Similarity Score	Overlap Coefficient	P-value	FDR Q-value	Shared Cluster
Epileptic encephalopathy, early infantile, 30	Generalized epilepsy	1	1	SIK1 (2)	0.01515	1.00000	4.197e-3	5.132e-3	
Epileptic encephalopathy, early infantile, 30	Genetic developmental and epileptic encephalopathy	1	1	SIK1 (2)	0.02703	1.00000	2.324e-3	3.054e-3	
Epileptic encephalopathy, early infantile, 30	West syndrome	1	1	SIK1 (2)	0.03125	1.00000	2.002e-3	2.719e-3	
Epileptic encephalopathy, early infantile, 30	Language development disorders	1	1	SIK1 (2)	0.03704	1.00000	1.679e-3	2.343e-3	
Epileptic encephalopathy, early infantile, 30	Myoclonic encephalopathy	1	1	SIK1 (2)	0.16667	1.00000	3.228e-4	6.412e-4