# GeDiPNet Shared-Gene Disease Pairs -- generated 2026-10-10 08:32:08
# Similarity: Jaccard index on shared curated genes (disease_gdp). Significance: upper-tail hypergeometric test (P(X>=k)), Benjamini-Hochberg FDR-corrected across all tested pairs. Corroborated Shared Genes: count of shared genes backed by >=2 distinct disease_gdp.main_source values combined across both diseases (e.g. GWAS-backed for one, ClinVar-backed for the other still counts); Shared Gene Names lists each gene's own source count in parentheses. Overlap Coefficient: shared genes / MIN(each disease's own total gene count) -- complements the Jaccard-based Similarity Score by showing how much of the SMALLER disease's entire known gene-set is covered by this pair, which Jaccard (dividing by the union) can understate. Shared Cluster: cluster id if both diseases fall in the same label-propagation cluster (scripts/build_disease_clusters.php), blank otherwise. See scripts/build_related.php on gedipnet.bicnirrh.res.in. Data as of: 2026-10-10 03:00:13. Filters applied: disease name contains "Calvarial doughnut lesions with bone fragility" (4 matching pairs).
Disease A	Disease B	Shared Genes	Corroborated Shared Genes	Shared Gene Names	Similarity Score	Overlap Coefficient	P-value	FDR Q-value	Shared Cluster
Calvarial doughnut lesions with bone fragility	Desbuquois syndrome	1	1	SGMS2 (4)	0.00176	1.00000	3.682e-2	3.867e-2	
Bone fragility with contractures, arterial rupture, and deafness	Calvarial doughnut lesions with bone fragility	1	1	SGMS2 (4)	0.02000	1.00000	3.182e-3	4.168e-3	
Calvarial doughnut lesions with bone fragility	Osteoporosis-pseudoglioma syndrome	1	1	SGMS2 (4)	0.02000	1.00000	3.182e-3	4.168e-3	
Calvarial doughnut lesions with bone fragility	Doughnut lesion of calvaria and bone fragility syndrome	1	1	SGMS2 (4)	0.50000	1.00000	6.494e-5	2.331e-4