# GeDiPNet Shared-Gene Disease Pairs -- generated 2026-10-20 03:13:51
# Similarity: Jaccard index on shared curated genes (disease_gdp). Significance: upper-tail hypergeometric test (P(X>=k)), Benjamini-Hochberg FDR-corrected across all tested pairs. Corroborated Shared Genes: count of shared genes backed by >=2 distinct disease_gdp.main_source values combined across both diseases (e.g. GWAS-backed for one, ClinVar-backed for the other still counts); Shared Gene Names lists each gene's own source count in parentheses. Overlap Coefficient: shared genes / MIN(each disease's own total gene count) -- complements the Jaccard-based Similarity Score by showing how much of the SMALLER disease's entire known gene-set is covered by this pair, which Jaccard (dividing by the union) can understate. Shared Cluster: cluster id if both diseases fall in the same label-propagation cluster (scripts/build_disease_clusters.php), blank otherwise. See scripts/build_related.php on gedipnet.bicnirrh.res.in. Data as of: 2026-10-20 03:00:20. Filters applied: disease name contains "Mental retardation, autosomal recessive 13" (5 matching pairs).
Disease A	Disease B	Shared Genes	Corroborated Shared Genes	Shared Gene Names	Similarity Score	Overlap Coefficient	P-value	FDR Q-value	Shared Cluster
Intellectual developmental disorder dysmorphic brain	Mental retardation, autosomal recessive 13	1	1	TRAPPC9 (5)	0.50000	1.00000	6.457e-5	1.985e-4	
Malunion fracture	Mental retardation, autosomal recessive 13	1	1	TRAPPC9 (2)	0.07143	1.00000	8.394e-4	1.336e-3	
Congenital neurologic anomalies	Mental retardation, autosomal recessive 13	1	1	TRAPPC9 (2)	0.00862	1.00000	7.425e-3	8.572e-3	
Mental retardation, autosomal recessive 13	Nonsyndromic intellectual disability	1	1	TRAPPC9 (4)	0.00699	1.00000	9.168e-3	1.032e-2	
Liver cirrhosis	Mental retardation, autosomal recessive 13	1	1	TRAPPC9 (2)	0.00377	1.00000	1.705e-2	1.845e-2