Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs Transcription factors Other IDs
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	6401
Gene name Gene Name - the full gene name approved by the HGNC.	Selectin E
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	SELE
Synonyms (NCBI Gene) Gene synonyms aliases	CD62E, ELAM, ELAM1, ESEL, LECAM2, selectin-e
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1q24.2
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is found in cytokine-stimulated endothelial cells and is thought to be responsible for the accumulation of blood leukocytes at sites of inflammation by mediating the adhesion of cells to the vascular lining. It exhibits st

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miRTarBase ID	miRNA	Experiments	Reference
MIRT004019	hsa-miR-31-5p	Immunocytochemistry, Northern blot, qRT-PCR, Western blot	19949084
MIRT005711	hsa-miR-17-5p	Luciferase reporter assay	19949084
MIRT005712	hsa-miR-17-3p	Luciferase reporter assay	19949084
MIRT005713	hsa-miR-155-5p	Luciferase reporter assay	19949084
MIRT005714	hsa-miR-221-3p	Luciferase reporter assay	19949084
MIRT005715	hsa-miR-222-3p	Luciferase reporter assay	19949084
MIRT005716	hsa-miR-1256	Luciferase reporter assay	19949084
MIRT722477	hsa-miR-3065-5p	HITS-CLIP	19536157
MIRT722476	hsa-miR-4742-3p	HITS-CLIP	19536157
MIRT722475	hsa-miR-627-3p	HITS-CLIP	19536157
MIRT722474	hsa-miR-630	HITS-CLIP	19536157
MIRT722473	hsa-miR-3686	HITS-CLIP	19536157
MIRT722472	hsa-miR-4743-3p	HITS-CLIP	19536157
MIRT722471	hsa-miR-4652-3p	HITS-CLIP	19536157
MIRT739056	hsa-miR-204	HITS-CLIP	33718276
MIRT739057	hsa-miR-623	HITS-CLIP	33718276
MIRT722477	hsa-miR-3065-5p	HITS-CLIP	19536157
MIRT722476	hsa-miR-4742-3p	HITS-CLIP	19536157
MIRT722475	hsa-miR-627-3p	HITS-CLIP	19536157
MIRT722474	hsa-miR-630	HITS-CLIP	19536157
MIRT722473	hsa-miR-3686	HITS-CLIP	19536157
MIRT722472	hsa-miR-4743-3p	HITS-CLIP	19536157
MIRT722471	hsa-miR-4652-3p	HITS-CLIP	19536157
MIRT1334249	hsa-miR-203	CLIP-seq
MIRT739055	hsa-miR-211	CLIP-seq
MIRT739059	hsa-miR-4446-5p	CLIP-seq
MIRT1334250	hsa-miR-4699-3p	CLIP-seq
MIRT739058	hsa-miR-4755-5p	CLIP-seq
MIRT2098902	hsa-miR-1236	CLIP-seq
MIRT2098903	hsa-miR-141	CLIP-seq
MIRT2098904	hsa-miR-200a	CLIP-seq
MIRT2098905	hsa-miR-377	CLIP-seq
MIRT2098906	hsa-miR-412	CLIP-seq
MIRT2098907	hsa-miR-759	CLIP-seq
MIRT2098908	hsa-miR-924	CLIP-seq
MIRT2323709	hsa-miR-1202	CLIP-seq
MIRT2323710	hsa-miR-1245	CLIP-seq
MIRT2323711	hsa-miR-151-5p	CLIP-seq
MIRT2323712	hsa-miR-151b	CLIP-seq
MIRT2323713	hsa-miR-3150b-3p	CLIP-seq
MIRT2323714	hsa-miR-3972	CLIP-seq
MIRT2323715	hsa-miR-4307	CLIP-seq
MIRT2323716	hsa-miR-4317	CLIP-seq
MIRT2323717	hsa-miR-4640-5p	CLIP-seq
MIRT2323718	hsa-miR-4716-5p	CLIP-seq
MIRT2323719	hsa-miR-4726-5p	CLIP-seq
MIRT2323720	hsa-miR-4784	CLIP-seq
MIRT2323721	hsa-miR-515-5p	CLIP-seq
MIRT2459064	hsa-miR-4729	CLIP-seq
MIRT2459065	hsa-miR-4803	CLIP-seq

Transcription factors

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Transcription factor	Regulation	Reference
ATF3	Repression	10964678
HOXA9	Unknown	22269951
NFKB1	Activation	10946302;12408953;12885753;19422386
NFKB1	Unknown	8878392
REL	Activation	12408953
RELA	Activation	10946302;12885753;19422386
RELA	Unknown	11827962;23042817;8878392
SIRT1	Unknown	21810449
STAT6	Repression	9092569

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GO ID	Ontology	Definition	Evidence	Reference
GO:0002092	Process	Positive regulation of receptor internalization	IDA	9312078
GO:0002523	Process	Leukocyte migration involved in inflammatory response	TAS	18029551
GO:0004888	Function	Transmembrane signaling receptor activity	IMP	12960351
GO:0005515	Function	Protein binding	IPI	18606703, 32814053
GO:0005615	Component	Extracellular space	IDA	9290466
GO:0005886	Component	Plasma membrane	TAS
GO:0005887	Component	Integral component of plasma membrane	IDA	28011641
GO:0005901	Component	Caveola	IDA	12960351
GO:0005905	Component	Clathrin-coated pit	IDA	18029551
GO:0006954	Process	Inflammatory response	TAS	2466335
GO:0007157	Process	Heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	IMP	18029551
GO:0007159	Process	Leukocyte cell-cell adhesion	IDA	7680663
GO:0007202	Process	Activation of phospholipase C activity	IMP	12960351
GO:0019722	Process	Calcium-mediated signaling	TAS	12960351
GO:0030029	Process	Actin filament-based process	IDA	8609175
GO:0030863	Component	Cortical cytoskeleton	IDA	8609175
GO:0032496	Process	Response to lipopolysaccharide	TAS	18029551
GO:0033691	Function	Sialic acid binding	IDA	7680663
GO:0034612	Process	Response to tumor necrosis factor	TAS	18029551
GO:0043274	Function	Phospholipase binding	IDA	12960351
GO:0045121	Component	Membrane raft	IDA	18029551
GO:0046872	Function	Metal ion binding	IEA
GO:0048471	Component	Perinuclear region of cytoplasm	IDA	12960351
GO:0050727	Process	Regulation of inflammatory response	TAS	18029551
GO:0050900	Process	Leukocyte migration	TAS
GO:0050901	Process	Leukocyte tethering or rolling	IMP	18029551
GO:0070492	Function	Oligosaccharide binding	IDA	7680663
GO:0070555	Process	Response to interleukin-1	IDA	8609175
GO:1903238	Process	Positive regulation of leukocyte tethering or rolling	ISS

MIM	HGNC	e!Ensembl
131210	10718	ENSG00000007908

Protein

UniProt ID

P16581

Protein name

E-selectin (CD62 antigen-like family member E) (Endothelial leukocyte adhesion molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD antigen CD62E)

Protein function

Cell-surface glycoprotein having a role in immunoadhesion. Mediates in the adhesion of blood neutrophils in cytokine-activated endothelium through interaction with SELPLG/PSGL1. May have a role in capillary morphogenesis. {ECO:0000269|PubMed:168

PDB

1ESL , 1G1T , 4C16 , 4CSY , 6EYI , 6EYJ , 6EYK , 8R5L , 8R5M

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00059	Lectin_C	29 → 140	Lectin C-type domain	Domain
PF00008	EGF	143 → 173	EGF-like domain	Domain
PF00084	Sushi	180 → 237	Sushi repeat (SCR repeat)	Domain
PF00084	Sushi	242 → 299	Sushi repeat (SCR repeat)	Domain
PF00084	Sushi	304 → 362	Sushi repeat (SCR repeat)	Domain
PF00084	Sushi	367 → 425	Sushi repeat (SCR repeat)	Domain
PF00084	Sushi	430 → 488	Sushi repeat (SCR repeat)	Domain
PF00084	Sushi	493 → 547	Sushi repeat (SCR repeat)	Domain

Sequence

MIASQFLSALTLVLLIKESGAWSYNTSTEAMTYDEASAYCQQRYTHLVAIQNKEEIEYLN
SILSYSPSYYWIGIRKVNNVWVWVGTQKPLTEEAKNWAPGEPNNRQKDEDCVEIYIKREK
DVGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVNC
TALESPEHGSLVCSHPLGNFSYNSSCSISCDRGYLPSSMETMQCMSSGEWSAPIPACNVV
ECDAVTNPANGFVECFQNPGSFPWNTTCTFDCEEGFELMGAQSLQCTSSGNWDNEKPTCK
AVTCRAVRQPQNGSVRCSHSPAGEFTFKSSCNFTCEEGFMLQGPAQVECTTQGQWTQQIP
VCEAFQCTALSNPERGYMNCLPSASGSFRYGSSCEFSCEQGFVLKGSKRLQCGPTGEWDN
EKPTCEAVRCDAVHQPPKGLVRCAHSPIGEFTYKSSCAFSCEEGFELHGSTQLECTSQGQ
WTEEVPSCQVVKCSSLAVPGKINMSCSGEPVFGTVCKFACPEGWTLNGSAARTCGATGHW
SGLLPTCEAPTESNIPLVAGLSAAGLSLLTLAPFLLWLRKCLRKAKKFVPASSCQSLESD
GSYQKPSYIL

Sequence length

610

Interactions

View interactions

SELE (selectin E)