Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs Transcription factors Other IDs Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	6382
Gene name Gene Name - the full gene name approved by the HGNC.	Syndecan 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	SDC1
Synonyms (NCBI Gene) Gene synonyms aliases	CD138, SDC, SYND1, syndecan
Chromosome Chromosome number	2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	2p24.1
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are req

Show/Hide all(412)

miRTarBase ID	miRNA	Experiments	Reference
MIRT007072	hsa-miR-10b-5p	Luciferase reporter assay	22573479
MIRT019998	hsa-miR-375	Microarray	20215506
MIRT021459	hsa-miR-9-5p	Microarray	17612493
MIRT045538	hsa-miR-149-5p	CLASH	23622248
MIRT052912	hsa-miR-143-3p	Luciferase reporter assay, qRT-PCR, Western blot	24722758
MIRT053346	hsa-miR-494-3p	Immunoblot, Luciferase reporter assay, qRT-PCR	23728345
MIRT007072	hsa-miR-10b-5p	Luciferase reporter assay	23206733
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT007072	hsa-miR-10b-5p	3'LIFE	25074381
MIRT007072	hsa-miR-10b-5p	3'LIFE	25074381
MIRT733585	hsa-miR-10a-5p	Luciferase reporter assay, qRT-PCR, Western blotting	32153518
MIRT733585	hsa-miR-10a-5p	Luciferase reporter assay, qRT-PCR, Western blotting	32153518
MIRT733936	hsa-miR-665	Western blotting, Microarray, Immunofluorescence, qRT-PCR, Flow cytometry	1
MIRT733936	hsa-miR-665	Flow cytometry, Immunofluorescence, Microarray, qRT-PCR, Western blotting	33042414
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT1331174	hsa-miR-1200	CLIP-seq
MIRT1331175	hsa-miR-1225-3p	CLIP-seq
MIRT1331176	hsa-miR-1233	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT1331178	hsa-miR-149	CLIP-seq
MIRT1331179	hsa-miR-182	CLIP-seq
MIRT1331180	hsa-miR-1915	CLIP-seq
MIRT1331181	hsa-miR-221	CLIP-seq
MIRT1331182	hsa-miR-222	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331188	hsa-miR-3064-5p	CLIP-seq
MIRT1331189	hsa-miR-3125	CLIP-seq
MIRT1331190	hsa-miR-3133	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT1331192	hsa-miR-3162-5p	CLIP-seq
MIRT1331193	hsa-miR-3163	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331195	hsa-miR-331-3p	CLIP-seq
MIRT1331196	hsa-miR-340	CLIP-seq
MIRT1331197	hsa-miR-34c-3p	CLIP-seq
MIRT1331198	hsa-miR-3646	CLIP-seq
MIRT1331199	hsa-miR-3650	CLIP-seq
MIRT1331200	hsa-miR-3684	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331203	hsa-miR-378g	CLIP-seq
MIRT1331204	hsa-miR-3913-3p	CLIP-seq
MIRT1331205	hsa-miR-3916	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT1331207	hsa-miR-3919	CLIP-seq
MIRT1331208	hsa-miR-3934	CLIP-seq
MIRT1331209	hsa-miR-3941	CLIP-seq
MIRT1331210	hsa-miR-3978	CLIP-seq
MIRT1331211	hsa-miR-4261	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT1331214	hsa-miR-4323	CLIP-seq
MIRT1331215	hsa-miR-4421	CLIP-seq
MIRT1331216	hsa-miR-4426	CLIP-seq
MIRT1331217	hsa-miR-4496	CLIP-seq
MIRT1331218	hsa-miR-4511	CLIP-seq
MIRT1331219	hsa-miR-451b	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT1331221	hsa-miR-4639-3p	CLIP-seq
MIRT1331222	hsa-miR-4647	CLIP-seq
MIRT1331223	hsa-miR-466	CLIP-seq
MIRT1331224	hsa-miR-4662b	CLIP-seq
MIRT1331225	hsa-miR-4672	CLIP-seq
MIRT1331226	hsa-miR-4685-5p	CLIP-seq
MIRT1331227	hsa-miR-4690-3p	CLIP-seq
MIRT1331228	hsa-miR-4719	CLIP-seq
MIRT1331229	hsa-miR-4722-3p	CLIP-seq
MIRT1331230	hsa-miR-4731-3p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT1331233	hsa-miR-4794	CLIP-seq
MIRT1331234	hsa-miR-4796-3p	CLIP-seq
MIRT1331235	hsa-miR-4801	CLIP-seq
MIRT1331236	hsa-miR-489	CLIP-seq
MIRT1331237	hsa-miR-494	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT1331243	hsa-miR-520g	CLIP-seq
MIRT1331244	hsa-miR-520h	CLIP-seq
MIRT1331245	hsa-miR-548aa	CLIP-seq
MIRT1331246	hsa-miR-548v	CLIP-seq
MIRT1331247	hsa-miR-552	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331249	hsa-miR-626	CLIP-seq
MIRT1331250	hsa-miR-635	CLIP-seq
MIRT1331251	hsa-miR-662	CLIP-seq
MIRT1331252	hsa-miR-759	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331254	hsa-miR-877	CLIP-seq
MIRT1331255	hsa-miR-9	CLIP-seq
MIRT1331256	hsa-miR-934	CLIP-seq
MIRT1331176	hsa-miR-1233	CLIP-seq
MIRT1331257	hsa-miR-1256	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT1331258	hsa-miR-1286	CLIP-seq
MIRT1331259	hsa-miR-133a	CLIP-seq
MIRT1331260	hsa-miR-133b	CLIP-seq
MIRT1331261	hsa-miR-1587	CLIP-seq
MIRT1331262	hsa-miR-1913	CLIP-seq
MIRT1331263	hsa-miR-19a	CLIP-seq
MIRT1331264	hsa-miR-19b	CLIP-seq
MIRT1331265	hsa-miR-2682	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331267	hsa-miR-31	CLIP-seq
MIRT1331268	hsa-miR-3180-5p	CLIP-seq
MIRT1331269	hsa-miR-3194-3p	CLIP-seq
MIRT1331270	hsa-miR-324-3p	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331271	hsa-miR-34a	CLIP-seq
MIRT1331272	hsa-miR-34c-5p	CLIP-seq
MIRT1331200	hsa-miR-3684	CLIP-seq
MIRT1331273	hsa-miR-3714	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331274	hsa-miR-377	CLIP-seq
MIRT1331203	hsa-miR-378g	CLIP-seq
MIRT1331275	hsa-miR-4267	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT1331276	hsa-miR-4292	CLIP-seq
MIRT1331216	hsa-miR-4426	CLIP-seq
MIRT1331277	hsa-miR-4459	CLIP-seq
MIRT1331278	hsa-miR-4488	CLIP-seq
MIRT1331279	hsa-miR-4492	CLIP-seq
MIRT1331280	hsa-miR-4498	CLIP-seq
MIRT1331281	hsa-miR-449a	CLIP-seq
MIRT1331282	hsa-miR-449b	CLIP-seq
MIRT1331283	hsa-miR-449c	CLIP-seq
MIRT1331284	hsa-miR-4505	CLIP-seq
MIRT1331219	hsa-miR-451b	CLIP-seq
MIRT1331285	hsa-miR-4525	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT1331222	hsa-miR-4647	CLIP-seq
MIRT1331286	hsa-miR-4655-3p	CLIP-seq
MIRT1331287	hsa-miR-4656	CLIP-seq
MIRT1331224	hsa-miR-4662b	CLIP-seq
MIRT1331288	hsa-miR-4675	CLIP-seq
MIRT1331289	hsa-miR-4697-5p	CLIP-seq
MIRT1331290	hsa-miR-4722-5p	CLIP-seq
MIRT1331291	hsa-miR-4731-5p	CLIP-seq
MIRT1331292	hsa-miR-4741	CLIP-seq
MIRT1331293	hsa-miR-4757-5p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT1331294	hsa-miR-519a	CLIP-seq
MIRT1331295	hsa-miR-519b-3p	CLIP-seq
MIRT1331296	hsa-miR-519c-3p	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331297	hsa-miR-637	CLIP-seq
MIRT1331298	hsa-miR-762	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331256	hsa-miR-934	CLIP-seq
MIRT2097903	hsa-miR-1179	CLIP-seq
MIRT2097904	hsa-miR-1229	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT2097905	hsa-miR-3150a-3p	CLIP-seq
MIRT2097906	hsa-miR-3175	CLIP-seq
MIRT2097907	hsa-miR-338-3p	CLIP-seq
MIRT2097908	hsa-miR-342-3p	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT2097909	hsa-miR-4310	CLIP-seq
MIRT2097910	hsa-miR-4667-5p	CLIP-seq
MIRT2097911	hsa-miR-4691-3p	CLIP-seq
MIRT2097912	hsa-miR-4700-5p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2097915	hsa-miR-561	CLIP-seq
MIRT2097916	hsa-miR-602	CLIP-seq
MIRT2097917	hsa-miR-939	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT2097918	hsa-miR-4645-5p	CLIP-seq
MIRT2097919	hsa-miR-4673	CLIP-seq
MIRT2097920	hsa-miR-4776-3p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2097921	hsa-miR-766	CLIP-seq
MIRT2322492	hsa-miR-10a	CLIP-seq
MIRT2322493	hsa-miR-10b	CLIP-seq
MIRT2322494	hsa-miR-1183	CLIP-seq
MIRT2322495	hsa-miR-1193	CLIP-seq
MIRT2322496	hsa-miR-1207-5p	CLIP-seq
MIRT1331257	hsa-miR-1256	CLIP-seq
MIRT2322497	hsa-miR-1273d	CLIP-seq
MIRT2322498	hsa-miR-1273e	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT2322499	hsa-miR-1324	CLIP-seq
MIRT1331259	hsa-miR-133a	CLIP-seq
MIRT1331260	hsa-miR-133b	CLIP-seq
MIRT2322500	hsa-miR-1909	CLIP-seq
MIRT2322501	hsa-miR-191	CLIP-seq
MIRT1331262	hsa-miR-1913	CLIP-seq
MIRT1331180	hsa-miR-1915	CLIP-seq
MIRT1331263	hsa-miR-19a	CLIP-seq
MIRT1331264	hsa-miR-19b	CLIP-seq
MIRT1331181	hsa-miR-221	CLIP-seq
MIRT1331182	hsa-miR-222	CLIP-seq
MIRT2322502	hsa-miR-2355-5p	CLIP-seq
MIRT1331265	hsa-miR-2682	CLIP-seq
MIRT2322503	hsa-miR-27a	CLIP-seq
MIRT2322504	hsa-miR-27b	CLIP-seq
MIRT2322505	hsa-miR-28-5p	CLIP-seq
MIRT2322506	hsa-miR-2861	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331267	hsa-miR-31	CLIP-seq
MIRT1331189	hsa-miR-3125	CLIP-seq
MIRT2322507	hsa-miR-3139	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT2322508	hsa-miR-3151	CLIP-seq
MIRT2322509	hsa-miR-3157-5p	CLIP-seq
MIRT2322510	hsa-miR-3176	CLIP-seq
MIRT1331269	hsa-miR-3194-3p	CLIP-seq
MIRT1331270	hsa-miR-324-3p	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331271	hsa-miR-34a	CLIP-seq
MIRT1331272	hsa-miR-34c-5p	CLIP-seq
MIRT2322511	hsa-miR-3607-5p	CLIP-seq
MIRT2322512	hsa-miR-3613-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322514	hsa-miR-3679-3p	CLIP-seq
MIRT1331273	hsa-miR-3714	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331274	hsa-miR-377	CLIP-seq
MIRT1331205	hsa-miR-3916	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT1331207	hsa-miR-3919	CLIP-seq
MIRT2322515	hsa-miR-3922-3p	CLIP-seq
MIRT2322516	hsa-miR-3925-3p	CLIP-seq
MIRT2322517	hsa-miR-3944-5p	CLIP-seq
MIRT2322518	hsa-miR-3960	CLIP-seq
MIRT1331210	hsa-miR-3978	CLIP-seq
MIRT2322519	hsa-miR-4252	CLIP-seq
MIRT1331211	hsa-miR-4261	CLIP-seq
MIRT1331275	hsa-miR-4267	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT2322521	hsa-miR-4277	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT2322522	hsa-miR-4467	CLIP-seq
MIRT1331217	hsa-miR-4496	CLIP-seq
MIRT1331281	hsa-miR-449a	CLIP-seq
MIRT1331282	hsa-miR-449b	CLIP-seq
MIRT1331283	hsa-miR-449c	CLIP-seq
MIRT1331218	hsa-miR-4511	CLIP-seq
MIRT2322523	hsa-miR-4512	CLIP-seq
MIRT2322524	hsa-miR-4514	CLIP-seq
MIRT2322525	hsa-miR-4534	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT2097918	hsa-miR-4645-5p	CLIP-seq
MIRT1331225	hsa-miR-4672	CLIP-seq
MIRT2097919	hsa-miR-4673	CLIP-seq
MIRT1331226	hsa-miR-4685-5p	CLIP-seq
MIRT2097911	hsa-miR-4691-3p	CLIP-seq
MIRT2322526	hsa-miR-4692	CLIP-seq
MIRT2322527	hsa-miR-4700-3p	CLIP-seq
MIRT2322528	hsa-miR-4736	CLIP-seq
MIRT2322529	hsa-miR-4758-3p	CLIP-seq
MIRT2322530	hsa-miR-4759	CLIP-seq
MIRT2322531	hsa-miR-4763-3p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT2322532	hsa-miR-4790-3p	CLIP-seq
MIRT2322533	hsa-miR-4802-5p	CLIP-seq
MIRT2322534	hsa-miR-485-3p	CLIP-seq
MIRT2322535	hsa-miR-488	CLIP-seq
MIRT2322536	hsa-miR-490-3p	CLIP-seq
MIRT1331237	hsa-miR-494	CLIP-seq
MIRT2322537	hsa-miR-512-5p	CLIP-seq
MIRT2322538	hsa-miR-513a-5p	CLIP-seq
MIRT1331294	hsa-miR-519a	CLIP-seq
MIRT1331295	hsa-miR-519b-3p	CLIP-seq
MIRT1331296	hsa-miR-519c-3p	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2322539	hsa-miR-548ac	CLIP-seq
MIRT2322540	hsa-miR-548d-3p	CLIP-seq
MIRT1331246	hsa-miR-548v	CLIP-seq
MIRT2322541	hsa-miR-548z	CLIP-seq
MIRT2322542	hsa-miR-583	CLIP-seq
MIRT2322543	hsa-miR-589	CLIP-seq
MIRT2322544	hsa-miR-610	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331249	hsa-miR-626	CLIP-seq
MIRT2322545	hsa-miR-656	CLIP-seq
MIRT2322546	hsa-miR-660	CLIP-seq
MIRT2322547	hsa-miR-708	CLIP-seq
MIRT1331252	hsa-miR-759	CLIP-seq
MIRT2097921	hsa-miR-766	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331254	hsa-miR-877	CLIP-seq
MIRT2394126	hsa-miR-1270	CLIP-seq
MIRT2394127	hsa-miR-4434	CLIP-seq
MIRT2394128	hsa-miR-4516	CLIP-seq
MIRT2394129	hsa-miR-4531	CLIP-seq
MIRT2394130	hsa-miR-620	CLIP-seq
MIRT2097909	hsa-miR-4310	CLIP-seq
MIRT2466008	hsa-miR-1184	CLIP-seq
MIRT2466009	hsa-miR-1205	CLIP-seq
MIRT2466010	hsa-miR-1268	CLIP-seq
MIRT2466011	hsa-miR-1268b	CLIP-seq
MIRT1331258	hsa-miR-1286	CLIP-seq
MIRT2466012	hsa-miR-3158-5p	CLIP-seq
MIRT1331277	hsa-miR-4459	CLIP-seq
MIRT2466013	hsa-miR-4527	CLIP-seq
MIRT1331290	hsa-miR-4722-5p	CLIP-seq
MIRT2618676	hsa-miR-339-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq
MIRT2618677	hsa-miR-515-5p	CLIP-seq
MIRT2618678	hsa-miR-885-3p	CLIP-seq
MIRT2618676	hsa-miR-339-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq

Transcription factors

Show/Hide all(2)

Transcription factor	Regulation	Reference
NFKB1	Activation	16132527
RELA	Activation	16132527

Show/Hide all(22)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	15292202, 16982797, 18093920, 23395182, 32814053, 33961781
GO:0005576	Component	Extracellular region	IEA
GO:0005796	Component	Golgi lumen	TAS
GO:0005886	Component	Plasma membrane	IEA
GO:0005886	Component	Plasma membrane	TAS	2324102
GO:0006898	Process	Receptor-mediated endocytosis	IEA
GO:0009897	Component	External side of plasma membrane	IEA
GO:0009986	Component	Cell surface	IBA
GO:0009986	Component	Cell surface	IDA	25063885
GO:0009986	Component	Cell surface	IEA
GO:0016020	Component	Membrane	IEA
GO:0016477	Process	Cell migration	IBA
GO:0038024	Function	Cargo receptor activity	IEA
GO:0042802	Function	Identical protein binding	IPI	18093920
GO:0043202	Component	Lysosomal lumen	TAS
GO:0048627	Process	Myoblast development	IEA
GO:0048627	Process	Myoblast development	ISS
GO:0055002	Process	Striated muscle cell development	IEP	9566955
GO:0060070	Process	Canonical Wnt signaling pathway	IEA
GO:0070062	Component	Extracellular exosome	HDA	19056867
GO:1903543	Process	Positive regulation of exosomal secretion	IMP	22660413
GO:1903553	Process	Positive regulation of extracellular exosome assembly	IMP	22660413

MIM	HGNC	e!Ensembl
186355	10658	ENSG00000115884

Protein

UniProt ID

P18827

Protein name

Syndecan-1 (SYND1) (CD antigen CD138)

Protein function

Cell surface proteoglycan that contains both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix (By similarity). Regulates exosome biogenesis in concert with SDCBP and PDCD6IP (PubMed:22660413). Ab

PDB

4GVC , 4GVD , 6EJE

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01034	Syndecan	245 → 308	Syndecan domain	Family

Tissue specificity

TISSUE SPECIFICITY: Detected in placenta (at protein level) (PubMed:32337544). Detected in fibroblasts (at protein level) (PubMed:36213313). {ECO:0000269|PubMed:32337544, ECO:0000269|PubMed:36213313}.

Sequence

MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPTKQEEFYA

Sequence length

310

Interactions

View interactions

Show/Hide Unknown Diseases (1)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Long QT Syndrome	long qt syndrome	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (208)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
3 Hydroxy 3 Methylglutaryl CoA Lyase Deficiency	Stimulate	23988031
Adenocarcinoma	Associate	18590537
Adenoma	Associate	26972718
Adenoma Oxyphilic	Associate	21630196
AIDS Associated Nephropathy	Associate	10090942
Airway Obstruction	Stimulate	31695352
Alzheimer Disease	Associate	30718543
Ameloblastoma	Associate	25690860, 28390135, 29850393, 33917771, 38504068
Ameloblastoma	Inhibit	30151060
Amyloidosis	Associate	19135901
Aneuploidy	Associate	26608463
Anti Neutrophil Cytoplasmic Antibody Associated Vasculitis	Associate	25788529
Arthritis	Associate	17545191
Arthritis Rheumatoid	Associate	17040961
Atherosclerosis	Associate	36524421
Atrial Fibrillation	Stimulate	36078037
Bile Duct Neoplasms	Inhibit	19420730
Bone Diseases	Associate	34884950
Bone Marrow Diseases	Associate	9136941
Breast Neoplasms	Associate	11454708, 12879463, 15479743, 16739330, 17244359, 17970043, 18729497, 19010933, 20132413, 20460509, 21430259, 23289672, 24392029, 25273930, 25361632 View all (18 more)
Breast Neoplasms	Stimulate	28399903, 38189813
Calcinosis Cutis	Associate	36088392
Cancer Pain	Associate	21356373
Carcinogenesis	Associate	15800679, 24392029, 25589885, 26526579, 26972718
Carcinoma	Associate	26852939
Carcinoma Adenoid Cystic	Associate	31540870
Carcinoma Basal Cell	Inhibit	26456960
Carcinoma Ductal	Stimulate	16739330
Carcinoma Ductal	Associate	24373193, 30151336
Carcinoma Ductal Breast	Associate	17244359, 18542065, 24373193, 25273930, 35587107
Carcinoma Hepatocellular	Associate	10507762, 15770719, 27556509, 30826971, 32977498
Carcinoma Intraductal Noninfiltrating	Associate	17244359, 35587107
Carcinoma Merkel Cell	Associate	34896889
Carcinoma Mucoepidermoid	Stimulate	31540870
Carcinoma Mucoepidermoid	Associate	36012301
Carcinoma Non Small Cell Lung	Associate	15378500, 31882513
Carcinoma Ovarian Epithelial	Associate	27048364
Carcinoma Pancreatic Ductal	Associate	37907515
Carcinoma Renal Cell	Associate	26526579
Carcinoma Signet Ring Cell	Inhibit	15902740
Carcinoma Squamous Cell	Stimulate	31976021
Carcinoma Squamous Cell	Inhibit	8054282
Cartilage Diseases	Associate	27082728
Celiac Disease	Associate	37455655
Cell Transformation Neoplastic	Associate	22905270, 28422726, 8695359
Chemical and Drug Induced Liver Injury	Associate	33402482
Cholangiocarcinoma	Associate	35672673
Cholestasis Extrahepatic	Associate	19420730
Chronic Pain	Associate	31649376
Chronic Periodontitis	Associate	31050915
Citrullinemia	Associate	35612662
Colonic Neoplasms	Inhibit	18590537
Colonic Neoplasms	Associate	19253033
Colorectal Neoplasms	Associate	11676858, 12055189, 20193112, 25589885, 36730554, 36800011
Colorectal Neoplasms	Inhibit	31182980, 31783811
Colorectal Neoplasms	Stimulate	31976021
Common Variable Immunodeficiency	Associate	32575504
Congenital thrombotic disease due to Protein C deficiency	Associate	18553158, 26666746
COVID 19	Associate	36420584
COVID 19	Stimulate	36430210
Crohn Disease	Associate	25267953
Cystitis Interstitial	Associate	18082196
Cysts	Inhibit	30151060
Death	Inhibit	15378500
Depressive Disorder Major	Inhibit	17660861
Dermatitis Atopic 1	Associate	12452825
Diabetes Mellitus	Associate	35079788
Diarrhea Chronic with Villous Atrophy	Associate	25198673
Diffuse Neurofibrillary Tangles with Calcification	Associate	10595940
Disease	Associate	23818359, 25198673, 26729247
Drug Related Side Effects and Adverse Reactions	Associate	21366263, 34337077
Dysplastic Nevus Syndrome	Associate	24762495
Endometrial Neoplasms	Associate	15851381, 31898658
Endometriosis	Associate	23206733
Endometritis	Associate	30922643, 33826645, 36531509
Endplate Acetylcholinesterase Deficiency	Associate	34104646
Esophageal Neoplasms	Inhibit	11676857
Esophageal Squamous Cell Carcinoma	Associate	20430722
Fibrolamellar hepatocellular carcinoma	Associate	22872444
Fibrosarcoma	Associate	22745764, 29216821, 31783811
Fibrosis	Stimulate	33402482
Gallbladder Neoplasms	Associate	32812461
Genomic Instability	Associate	23969274
Glioblastoma	Associate	30497369, 37441590, 40052499
Glioma	Associate	22906261, 28422726, 40495644
Glucosephosphate Dehydrogenase Deficiency	Associate	25805752, 31898658
Head and Neck Neoplasms	Associate	10027330, 11676857, 8054282
Heart Diseases	Associate	23139380
HELLP Syndrome	Associate	23807541
Hematologic Neoplasms	Associate	34337077
Hepatitis Autoimmune	Associate	36973120
Herpes Simplex	Associate	20439611
HIV Infections	Associate	20700059
Hodgkin Disease	Associate	23988031, 9160685, 9746758
Huntington Disease	Associate	10090942
Hyperplasia	Associate	31898658
Hypoxia	Inhibit	24126540, 26729247
Hypoxia	Stimulate	26878134
Hypoxia Brain	Inhibit	24126540
Immunoproliferative Small Intestinal Disease	Associate	16773719
Inflammation	Associate	18082196, 23289672, 28270211, 31145753, 31695352, 31730447, 33817728, 36524421, 36834923
Inflammation	Inhibit	23807541
Inflammatory Breast Neoplasms	Associate	28270211, 31145753
Intestinal Diseases	Inhibit	15902740
Intestinal Diseases	Associate	16773719
Kartagener Syndrome	Associate	34601504
Kidney Diseases	Associate	28264449, 31535918
Kidney Failure Chronic	Associate	31882513
Kidney Neoplasms	Associate	21630196
Kwashiorkor	Associate	19116330
Leukemia	Associate	34337077
Leukemia Lymphocytic Chronic B Cell	Associate	10050727, 18190591, 26526579
Leukemia Plasma Cell	Associate	24715427, 24947090, 35212134
Leukemic Infiltration	Stimulate	31661985
Liver Cirrhosis	Associate	33402482
Liver Diseases	Associate	30826971, 33402482
Liver Failure	Associate	11676858
Liver Failure	Stimulate	30826971
Lung Diseases	Stimulate	31976021
Lung Neoplasms	Associate	11786733, 23374247
Lupus Erythematosus Systemic	Associate	11067960, 21961021, 39867907
Lupus Erythematosus Systemic	Stimulate	21320038
Lymphangioleiomyomatosis	Associate	23867796
Lymphatic Metastasis	Inhibit	15851381, 31182980
Lymphatic Metastasis	Associate	18395897, 18590537, 20193112, 36012301
Lymphoma	Associate	10027728, 10050727, 11006575, 20614267, 26878134
Lymphoma B Cell	Associate	15905193, 9746758
Lymphoma Large B Cell Diffuse	Associate	16778379, 19336959, 22994707
Lymphoma Mantle Cell	Associate	22024108
Lymphoma Non Hodgkin	Associate	10050727, 9446632
Lymphoma Non Hodgkin	Stimulate	26526579
Lymphoma Primary Effusion	Associate	10027728, 11091208, 21980345, 9389706
Lymphoproliferative Disorders	Associate	12429820, 12907442, 23551167
Malaria	Associate	25805752
Malignant mesenchymal tumor	Associate	19802384, 21731601, 26508762
Melanoma	Associate	19696445, 20803552, 24722758
Mesenchymoma	Associate	19840029
Mesothelioma	Associate	23144729, 32664515
Mesothelioma Malignant	Associate	23144729, 26210886, 32664515, 36523602
Monoclonal Gammopathy of Undetermined Significance	Associate	23431957
Mouth Neoplasms	Associate	24762495
Mucocutaneous Lymph Node Syndrome	Associate	31159728
Multiple Myeloma	Associate	10027726, 10050721, 10050727, 10848782, 11830493, 11877746, 11985351, 12101201, 12200383, 12609839, 12911939, 12969976, 14576062, 14615378, 15274361 View all (81 more)
Multiple Myeloma	Inhibit	29151530
Multiple Myeloma	Stimulate	29798960
Multiple Sclerosis	Associate	32398079
Myositis	Associate	35612662
Neoplasm Invasiveness	Associate	25361632
Neoplasm Metastasis	Inhibit	10050721, 10507762, 25935541
Neoplasm Metastasis	Associate	11676858, 18395897, 18590537, 19696445, 22745764, 25404732, 27448979, 28399903, 30151336, 31424668, 31540870, 33195694, 36088392, 36810912
Neoplasm Metastasis	Stimulate	38183115
Neoplasms	Associate	10027330, 11676858, 11830493, 16150948, 16265353, 16286510, 17714757, 17970043, 18542065, 18590537, 19010933, 19305494, 19420730, 19671918, 19822079 View all (62 more)
Neoplasms	Stimulate	15851381, 27434331, 28422726
Neoplasms	Inhibit	19253033, 21731601, 24502776, 30151060, 32388727
Neoplasms Plasma Cell	Associate	33197893, 35621632
Neuroblastoma	Associate	27448979
Neurofibromatosis Familial Spinal	Associate	37217626
Neuromyelitis Optica	Associate	24340077
Non Muscle Invasive Bladder Neoplasms	Inhibit	24524203
Odontoma	Associate	28390135, 33917771
Osteoarthritis	Associate	10607497, 23546957, 32832544
Ovarian Neoplasms	Associate	26191180, 26526579, 27048364, 35047055
Pancreatic Intraductal Neoplasms	Associate	37907515
Pancreatic Neoplasms	Associate	31412643, 31976021, 38048216
Pancreatic Neoplasms	Stimulate	31584877
Paraproteinemias	Associate	23969274
Periodontitis	Associate	35888586
Personality Disorders	Associate	30065348, 33995654
Plaque Amyloid	Associate	10595940, 30718543
Plasmablastic Lymphoma	Associate	12437635, 15578069, 15803491, 18666332, 26960478, 29327711, 32994268
Plasmacytoma	Associate	29151530
Polyps	Associate	33817728
Pre Eclampsia	Associate	23807541
Pre Eclampsia	Inhibit	27299886
Pregnancy Complications	Associate	25830352
Pregnancy in Diabetics	Associate	25830352
Prostatic Neoplasms	Associate	21317913, 23066085, 28744948, 30065348, 32124938, 33195694, 33995654, 34445387, 36089417, 37596305
Prostatitis	Associate	28744948
Prostatitis	Inhibit	31976021
Protein Losing Enteropathies	Associate	11106564
Proteinuria	Associate	18032547
Pulmonary Disease Chronic Obstructive	Associate	31695352
Pyruvate Carboxylase Deficiency Disease	Associate	17889722, 26130131, 36555330
Radicular Cyst	Associate	21915520
Renal Insufficiency	Associate	31843086
Renal Insufficiency Chronic	Associate	34638892
Retinal Dysplasia	Associate	24762495
Salivary Gland Neoplasms	Associate	31540870, 36012301
Sjogren's Syndrome	Stimulate	31661985
Smoldering Multiple Myeloma	Associate	33488620
Spondylitis Ankylosing	Associate	36524421
Squamous Cell Carcinoma of Head and Neck	Associate	10027330, 20237901, 26057450, 36510963
Stomach Neoplasms	Inhibit	15902740, 18395897
Stomach Neoplasms	Associate	18751407, 31424668
Takayasu Arteritis	Associate	36882846
Tertiary Lymphoid Structures	Associate	18590537
Thymus Neoplasms	Associate	20224726
Thyroid Cancer Papillary	Associate	30614796
Tissue Adhesions	Associate	30922643
Triple Negative Breast Neoplasms	Associate	24392029, 28270211
Urethral Neoplasms	Associate	26514209, 31976021
Urinary Bladder Neoplasms	Associate	19822079, 24524203, 25387487, 36131343
Urinary Bladder Neoplasms	Stimulate	33721374
Uterine Cervical Dysplasia	Associate	36768853
Uterine Cervical Neoplasms	Associate	32388727, 35098380
Vascular Diseases	Associate	34638892
Waldenstrom Macroglobulinemia	Stimulate	22949945
Waldenstrom Macroglobulinemia	Associate	24189269, 33634586

SDC1 (syndecan 1)