Gene Gene information from NCBI Gene database.
Entrez ID 5787
Gene name Protein tyrosine phosphatase receptor type B
Gene symbol PTPRB
Synonyms (NCBI Gene)
HPTP-BETAHPTPBPTPBR-PTP-BETAVEPTP
Chromosome 12
Chromosome location 12q15
Summary The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic tran
miRNA miRNA information provided by mirtarbase database.
245
miRTarBase ID miRNA Experiments Reference
MIRT022308 hsa-miR-124-3p Microarray 18668037
MIRT053404 hsa-miR-629-5p Microarray 23807165
MIRT641056 hsa-miR-5582-3p HITS-CLIP 23824327
MIRT641054 hsa-miR-3606-3p HITS-CLIP 23824327
MIRT641055 hsa-miR-513a-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis IBA
GO:0001525 Process Angiogenesis IEA
GO:0001649 Process Osteoblast differentiation IDA 22869525
GO:0001649 Process Osteoblast differentiation IDA 22869525
GO:0004721 Function Phosphoprotein phosphatase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
176882 9665 ENSG00000127329
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23467
Protein name Receptor-type tyrosine-protein phosphatase beta (Protein-tyrosine phosphatase beta) (R-PTP-beta) (EC 3.1.3.48) (Vascular endothelial protein tyrosine phosphatase) (VE-PTP)
Protein function Plays an important role in blood vessel remodeling and angiogenesis. Not necessary for the initial formation of blood vessels, but is essential for their maintenance and remodeling. Can induce dephosphorylation of TEK/TIE2, CDH5/VE-cadherin and
PDB 2AHS , 2H02 , 2H03 , 2H04 , 2HC1 , 2HC2 , 2I3R , 2I3U , 2I4E , 2I4G , 2I4H , 2I5X , 8JBN , 8JBY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00041 fn3 24 103 Fibronectin type III domain Domain
PF00041 fn3 112 194 Fibronectin type III domain Domain
PF00041 fn3 290 368 Fibronectin type III domain Domain
PF00041 fn3 378 460 Fibronectin type III domain Domain
PF00041 fn3 468 547 Fibronectin type III domain Domain
PF00041 fn3 555 633 Fibronectin type III domain Domain
PF00041 fn3 644 725 Fibronectin type III domain Domain
PF00041 fn3 732 812 Fibronectin type III domain Domain
PF00041 fn3 819 899 Fibronectin type III domain Domain
PF00041 fn3 908 986 Fibronectin type III domain Domain
PF00041 fn3 996 1077 Fibronectin type III domain Domain
PF00041 fn3 1086 1165 Fibronectin type III domain Domain
PF00041 fn3 1174 1252 Fibronectin type III domain Domain
PF00041 fn3 1262 1344 Fibronectin type III domain Domain
PF00041 fn3 1356 1435 Fibronectin type III domain Domain
PF18861 PTP_tm 1473 1643 Transmembrane domain of protein tyrosine phosphatase, receptor type J Family
PF00102 Y_phosphatase 1727 1962 Protein-tyrosine phosphatase Domain
Sequence
MLSHGAGLALWITLSLLQTGLAEPERCNFTLAESKASSHSVSIQWRILGSPCNFSLIYSS
DTLGAALCPTFRIDNTTYGCNLQDLQAGTIYNFRIISLDEERT
VVLQTDPLPPARFGVSK
EKTTSTSLHVWWTPSSGKVTSYEVQLFDENNQKIQGVQIQESTSWNEYTFFNLTAGSKYN
IAITAVSGGKRSFS
VYTNGSTVPSPVKDIGISTKANSLLISWSHGSGNVERYRLMLMDKG
ILVHGGVVDKHATSYAFHGLTPGYLYNLTVMTEAAGLQNYRWKLVRTAPMEVSNLKVTND
GSLTSLKVKWQRPPGNVDSYNITLSHKGTIKESRVLAPWITETHFKELVPGRLYQVTVSC
VSGELSAQ
KMAVGRTFPDKVANLEANNNGRMRSLVVSWSPPAGDWEQYRILLFNDSVVLL
NITVGKEETQYVMDDTGLVPGRQYEVEVIVESGNLKNSER
CQGRTVPLAVLQLRVKHANE
TSLSIMWQTPVAEWEKYIISLADRDLLLIHKSLSKDAKEFTFTDLVPGRKYMATVTSISG
DLKNSSS
VKGRTVPAQVTDLHVANQGMTSSLFTNWTQAQGDVEFYQVLLIHENVVIKNES
ISSETSRYSFHSLKSGSLYSVVVTTVSGGISSR
QVVVEGRTVPSSVSGVTVNNSGRNDYL
SVSWLLAPGDVDNYEVTLSHDGKVVQSLVIAKSVRECSFSSLTPGRLYTVTITTRSGKYE
NHSFS
QERTVPDKVQGVSVSNSARSDYLRVSWVHATGDFDHYEVTIKNKNNFIQTKSIPK
SENECVFVQLVPGRLYSVTVTTKSGQYEANEQ
GNGRTIPEPVKDLTLRNRSTEDLHVTWS
GANGDVDQYEIQLLFNDMKVFPPFHLVNTATEYRFTSLTPGRQYKILVLTISGDVQQSA
F
IEGFTVPSAVKNIHISPNGATDSLTVNWTPGGGDVDSYTVSAFRHSQKVDSQTIPKHVFE
HTFHRLEAGEQYQIMIASVSGSLKNQ
INVVGRTVPASVQGVIADNAYSSYSLIVSWQKAA
GVAERYDILLLTENGILLRNTSEPATTKQHKFEDLTPGKKYKIQILTVSGGLFSKEA
QTE
GRTVPAAVTDLRITENSTRHLSFRWTASEGELSWYNIFLYNPDGNLQERAQVDPLVQSFS
FQNLLQGRMYKMVIVTHSGELSNES
FIFGRTVPASVSHLRGSNRNTTDSLWFNWSPASGD
FDFYELILYNPNGTKKENWKDKDLTEWRFQGLVPGRKYVLWVVTHSGDLSNK
VTAESRTA
PSPPSLMSFADIANTSLAITWKGPPDWTDYNDFELQWLPRDALTVFNPYNNRKSEGRIVY
GLRPGRSYQFNVKTVSGDSWKTYS
KPIFGSVRTKPDKIQNLHCRPQNSTAIACSWIPPDS
DFDGYSIECRKMDTQEVEFSRKLEKEKSLLNIMMLVPHKRYLVSIKVQSAGMTSE
VVEDS
TITMIDRPPPPPPHIRVNEKDVLISKSSINFTVNCSWFSDTNGAVKYFTVVVREADGSDE
LKPEQQHPLPSYLEYRHNASIRVYQTNYFASKCAENPNSNSKSFNIKLGAEMESLGGKCD
PTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAI
EGVSAGLFLIGMLVAVVALLICR
QKVSHGRERPSARLSIRRDRPLSVHLNLGQKGNRKTS
CPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYD
ATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVM
VTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLI
RHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRI
LQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRD
VLRARKLRSEQENPLFPI
YENVNPEYHRDPVYSRH
Sequence length 1997
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
13
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Adrenocortical carcinoma, hereditary Benign rs74349667 RCV005908295
Cervical cancer Benign rs74349667 RCV005908296
Cholangiocarcinoma Benign rs74349667 RCV005908300
Clear cell carcinoma of kidney Uncertain significance rs773098818 RCV005939152
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Carcinoma Renal Cell Associate 37689589
Central Serous Chorioretinopathy Associate 30724488, 38263930
Diabetes Mellitus Type 2 Associate 30845793
Epileptic Syndromes Associate 30724488
Gaucher Disease Associate 33568133
Glaucoma Associate 36450729
Graves Disease Associate 36397361
Hemangiosarcoma Associate 24633157, 26440310, 32123305
Melanoma Associate 25393105
Myopia Associate 30826882