Gene Gene information from NCBI Gene database.
Entrez ID 22978
Gene name 5'-nucleotidase, cytosolic II
Gene symbol NT5C2
Synonyms (NCBI Gene)
GMPNT5BPNT5SPG45SPG65cN-II
Chromosome 10
Chromosome location 10q24.32-q24.33
Summary This gene encodes a hydrolase that serves as an important role in cellular purine metabolism by acting primarily on inosine 5`-monophosphate and other purine nucleotides. [provided by RefSeq, Oct 2011]
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs11598702 T>C,G Drug-response Intron variant, genic upstream transcript variant, upstream transcript variant
rs587777173 G>A Pathogenic Coding sequence variant, genic upstream transcript variant, 5 prime UTR variant, stop gained
rs587777174 T>A Pathogenic Coding sequence variant, intron variant, stop gained, 5 prime UTR variant
rs763305896 GT>- Pathogenic Coding sequence variant, 5 prime UTR variant, frameshift variant
rs886037656 T>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
584
miRTarBase ID miRNA Experiments Reference
MIRT020065 hsa-miR-375 Microarray 20215506
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT025290 hsa-miR-34a-5p Proteomics 21566225
MIRT031022 hsa-miR-21-5p Microarray 18591254
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000255 Process Allantoin metabolic process IDA 21873433
GO:0000255 Process Allantoin metabolic process IEA
GO:0003824 Function Catalytic activity IEA
GO:0005515 Function Protein binding IPI 16189514, 19060904, 25416956, 28514442, 32296183, 33961781
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600417 8022 ENSG00000076685
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49902
Protein name Cytosolic purine 5'-nucleotidase (EC 3.1.3.5) (EC 3.1.3.99) (Cytosolic 5'-nucleotidase II) (cN-II) (Cytosolic IMP/GMP-specific 5'-nucleotidase) (Cytosolic nucleoside phosphotransferase 5'N) (EC 2.7.1.77) (High Km 5'-nucleotidase)
Protein function Broad specificity cytosolic 5'-nucleotidase that catalyzes the dephosphorylation of 6-hydroxypurine nucleoside 5'-monophosphates (PubMed:10092873, PubMed:12907246, PubMed:1659319, PubMed:9371705). In addition, possesses a phosphotransferase acti
PDB 2J2C , 2JC9 , 2JCM , 2XCV , 2XCW , 2XCX , 2XJB , 2XJC , 2XJD , 2XJE , 2XJF , 4H4B , 5CQZ , 5CR7 , 5K7Y , 5L4Z , 5L50 , 5OPK , 5OPL , 5OPM , 5OPN , 5OPO , 5OPP , 6DD3 , 6DDB , 6DDC , 6DDH , 6DDK , 6DDL , 6DDO , 6DDQ , 6DDX , 6DDY , 6DDZ , 6DE0 , 6DE1 , 6DE2 , 6DE3 , 6FIR , 6FIS , 6FIU , 6FIW , 6FXH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05761 5_nucleotid 35 489 Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:9371705}.
Sequence
Sequence length 561
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
207
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Hereditary spastic paraplegia 45 Likely pathogenic; Pathogenic rs1457224574, rs753295868, rs587777173, rs886037656, rs886037657, rs587777174, rs886037658, rs1385107002, rs2134504868, rs2494516804, rs770036597, rs768651632, rs769417998, rs1458171628, rs2494459588
View all (9 more)
RCV001330410
RCV001352898
RCV000087268
RCV000087269
RCV000087270
RCV000087271
RCV000087272
RCV002250160
RCV002250161
RCV002284297
RCV002289248
RCV003060864
RCV003104643
RCV002780484
RCV002838278
RCV003583550
RCV003885396
RCV003885397
RCV003989271
RCV000652085
RCV000702998
RCV001030784
RCV001035006
RCV001224426
Neurodevelopmental disorder Likely pathogenic; Pathogenic rs753295868 RCV002276708
Thyroid cancer, nonmedullary, 1 Likely pathogenic rs1273292745 RCV005937375
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs12261294 RCV005919523
Cholangiocarcinoma Benign rs34758128 RCV005919535
Clear cell carcinoma of kidney Uncertain significance rs747868392, rs754629068 RCV005930922
RCV005901626
Colorectal cancer Benign rs767341883 RCV005871220