Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2475
Gene name Gene Name - the full gene name approved by the HGNC.
Mechanistic target of rapamycin kinase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
MTOR
Synonyms (NCBI Gene) Gene synonyms aliases
FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.22
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene belongs to a family of phosphatidylinositol kinase-related kinases. These kinases mediate cellular responses to stresses such as DNA damage and nutrient deprivation. This kinase is a component of two distinct complexes, mT
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs55881943 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, non coding transcript variant
rs147774167 G>A Conflicting-interpretations-of-pathogenicity Missense variant, 5 prime UTR variant, coding sequence variant, non coding transcript variant
rs587777893 G>A,T Not-provided, pathogenic Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant
rs587777894 G>A,T Pathogenic, likely-pathogenic, not-provided Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant
rs587777900 C>T Likely-pathogenic, not-provided Genic downstream transcript variant, coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006146 hsa-miR-99a-5p Luciferase reporter assay, qRT-PCR, Western blot 21878637
MIRT006146 hsa-miR-99a-5p Luciferase reporter assay, qRT-PCR, Western blot 21878637
MIRT006155 hsa-miR-520c-3p Luciferase reporter assay, qRT-PCR, Western blot 21898400
MIRT006155 hsa-miR-520c-3p Luciferase reporter assay, qRT-PCR, Western blot 21898400
MIRT006157 hsa-miR-373-3p Luciferase reporter assay, qRT-PCR, Western blot 21898400
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IDA 20713597, 23202584, 23392225, 23524951, 25891078, 28890335, 33637724
GO:0000045 Process Autophagosome assembly IMP 30778222
GO:0000139 Component Golgi membrane IEA
GO:0000166 Function Nucleotide binding IEA
GO:0000822 Function Inositol hexakisphosphate binding IDA 33158864
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601231 3942 ENSG00000198793
Protein
UniProt ID P42345
Protein name Serine/threonine-protein kinase mTOR (EC 2.7.11.1) (FK506-binding protein 12-rapamycin complex-associated protein 1) (FKBP12-rapamycin complex-associated protein) (Mammalian target of rapamycin) (mTOR) (Mechanistic target of rapamycin) (Rapamycin and FKBP
Protein function Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals (PubMed:12087098, PubMed:12150925, PubMed:12150926, PubMed:122
PDB 1AUE , 1FAP , 1NSG , 2FAP , 2GAQ , 2NPU , 2RSE , 3FAP , 3JBZ , 4DRH , 4DRI , 4DRJ , 4FAP , 4JSN , 4JSP , 4JSV , 4JSX , 4JT5 , 4JT6 , 5FLC , 5GPG , 5H64 , 5WBH , 5WBU , 5WBY , 5ZCS , 6BCU , 6BCX , 6M4U , 6M4W , 6SB0 , 6SB2 , 6ZWM , 6ZWO , 7EPD , 7OWG , 7PE7 , 7PE8 , 7PE9 , 7PEA , 7PEB , 7PEC , 7TZO , 7UXC , 7UXH , 8ER6 , 8ER7 , 8ERA , 8PPZ , 8RCH , 8RCK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11865 DUF3385 854 1024 Domain of unknown function (DUF3385) Family
PF02259 FAT 1513 1908 FAT domain Family
PF08771 FRB_dom 2015 2113 FKBP12-rapamycin binding domain Domain
PF00454 PI3_PI4_kinase 2181 2431 Phosphatidylinositol 3- and 4-kinase Family
PF02260 FATC 2518 2549 FATC domain Family
Tissue specificity TISSUE SPECIFICITY: Expressed in numerous tissues, with highest levels in testis. {ECO:0000269|PubMed:12408816, ECO:0000269|PubMed:7809080}.
Sequence
MLGTGPAAATTAATTSSNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES
TRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNATRIGRFANYLRNLLPSNDP
VVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVP
TFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREPKEMQKPQWYRHTFEE
AEKGFDETLAKEKGMNRDDRIHGALLILNELVRISSMEGERLREEMEEITQQQLVHDKYC
KDLMGFGTKPRHITPFTSFQAVQPQQSNALVGLLGYSSHQGLMGFGTSPSPAKSTLVESR
CCRDLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHV
LSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDA
TVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLL
KMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDVGSITLALRTLGSFEFEGHSLT
QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAVQVVADVLSKLL
VVGITDPDPDIRYCVLASLDERFDAHLAQAENLQALFVALNDQVFEIRELAICTVGRLSS
MNPAFVMPFLRKMLIQILTELEHSGIGRIKEQSARMLGHLVSNAPRLIRPYMEPILKALI
LKLKDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQDSSLLAKRQVA
LWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGLLGALDPYKHK
VNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAVSMVALMRIFR
DQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIREFLFQQLGMLV
SFVK
SHIRPYMDEIVTLMREFWVMNTSIQSTIILLIEQIVVALGGEFKLYLPQLIPHMLR
VFMHDNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLFDAPEAPLPSRKAALETVD
RLTESLDFTDYASRIIHPIVRTLDQSPELRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLV
RHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQGDALASGPVETGPMKKLHV
STINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNA
AFVSCWSELNEDQQDELIRSIELALTSQDIAEVTQTLLNLAEFMEHSDKGPLPLRDDNGI
VLLGERAAKCRAYAKALHYKELEFQKGPTPAILESLISINNKLQQPEAAAGVLEYAMKHF
GELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEK
WTLVNDETQAKMARMAAAAAWGLGQWDSMEEYTCMIPRDTHDGAFYRAVLALHQDLFSLA
QQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVPERREIIRQIWW
ERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVD
PSRQLDHPLPTVHPQVTYAYMKNMWKSARKIDAFQHMQHFVQTMQQQAQHAIATEDQQHK
QELHKLMARCFLKLGEWQLNLQGINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEA
VLHYKHQNQARDEKKKLRHASGANITNATTAATTAATATTTASTEGSNSESEAESTENSP
TPSPLQKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNNLQDTLRVLT
LWFDYGHWPDVN
EALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVAS
KSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFG
ERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQA
WDLYYHVFRRISK
QLPQLTSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSL
QVITSKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNL
SIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKKKILLNIEHRIMLRMAPDYDHLTL
MQKVEVFEHAVNNTAGDDLAKLLWLKSPSSEVWFDRRTNYTRSLAVMSMVGYILGLGDRH
PSNLMLDRLSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITC
HTVMEVLREHKDSVMAVLEAFVYDPLLNWRL
MDTNTKGNKRSRTRTDSYSAGQSVEILDG
VELGEPAHKKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLD
VPTQVELLIKQATSHENLCQCYIGWCPFW
Sequence length 2549
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Isolated focal cortical dysplasia Isolated focal cortical dysplasia type II rs1085307113, rs1085307114, rs863225264, rs587777893, rs1057519779, rs587777894 N/A
Macrocephaly-Intellectual Disability-Neurodevelopmental Disorder-Small Thorax Syndrome macrocephaly-intellectual disability-neurodevelopmental disorder-small thorax syndrome rs1057524044, rs786205165, rs863225264, rs1553171141, rs869312666, rs1557739557, rs869312671, rs878855328, rs587777893, rs1057519915, rs587777900 N/A
Mental retardation Intellectual disability, severe rs863225264 N/A
Hemimegalencephaly hemimegalencephaly rs1057519914 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Diabetes Type 2 diabetes, Body mass index and type 2 diabetes (pairwise) N/A N/A GWAS
Papillary Renal Carcinoma Papillary renal cell carcinoma type 1 N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
3 methylcrotonyl CoA carboxylase 1 deficiency Associate 24262658
AA amyloidosis Associate 25992776
Abortion Spontaneous Associate 33371356
Absent radii and thrombocytopenia Associate 21304100
Acquired Immunodeficiency Syndrome Associate 28192480
Acrodermatitis Associate 24558502
ACTH Secreting Pituitary Adenoma Associate 27615706
Acute Disease Associate 37295770
Adenocarcinoma Associate 18413730, 19090006, 22767218, 23544944, 24603303, 26261591, 27096957, 27814385, 28302097, 33587450, 36991000, 37894790, 39337548, 39739112
Adenocarcinoma Stimulate 27775076, 28831205, 33865336