Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1387
Gene name Gene Name - the full gene name approved by the HGNC.
CREB binding lysine acetyltransferase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CREBBP
Synonyms (NCBI Gene) Gene synonyms aliases
CBP, KAT3A, MKHK1, RSTS, RSTS1
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is ubiquitously expressed and is involved in the transcriptional coactivation of many different transcription factors. First isolated as a nuclear protein that binds to cAMP-response element binding protein (CREB), this gene is now known to play
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11644721 C>A,T Pathogenic Splice acceptor variant, genic upstream transcript variant
rs28937315 T>C Likely-pathogenic Missense variant, coding sequence variant
rs61753381 G>T Benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs121434624 G>A,C Pathogenic Missense variant, coding sequence variant, stop gained, genic upstream transcript variant
rs121434625 G>A Pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004683 hsa-miR-324-3p Luciferase reporter assay 19478946
MIRT051673 hsa-let-7e-5p CLASH 23622248
MIRT048558 hsa-miR-100-5p CLASH 23622248
MIRT045961 hsa-miR-125b-5p CLASH 23622248
MIRT039168 hsa-miR-769-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
CIITA Unknown 9858618
E2F1 Unknown 9238849
EP300 Unknown 9651310
MYC Unknown 12776737
YY1 Repression 21852380
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 21539536
GO:0000123 Component Histone acetyltransferase complex IBA
GO:0000123 Component Histone acetyltransferase complex IEA
GO:0000724 Process Double-strand break repair via homologous recombination IDA 29670289, 30612738
GO:0000785 Component Chromatin IDA 21539536
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600140 2348 ENSG00000005339
Protein
UniProt ID Q92793
Protein name CREB-binding protein (Histone lysine acetyltransferase CREBBP) (EC 2.3.1.48) (Protein lactyltransferas CREBBP) (EC 2.3.1.-) (Protein-lysine acetyltransferase CREBBP) (EC 2.3.1.-)
Protein function Acetylates histones, giving a specific tag for transcriptional activation (PubMed:21131905, PubMed:24616510). Mediates acetylation of histone H3 at 'Lys-18' and 'Lys-27' (H3K18ac and H3K27ac, respectively) (PubMed:21131905). Also acetylates non-
PDB 1JSP , 1LIQ , 1RDT , 1WO3 , 1WO4 , 1WO5 , 1WO6 , 1WO7 , 1ZOQ , 2D82 , 2KJE , 2KWF , 2L84 , 2L85 , 2LXS , 2LXT , 2N1A , 2RNY , 3DWY , 3P1C , 3P1D , 3P1E , 3P1F , 3SVH , 4A9K , 4N3W , 4N4F , 4NR4 , 4NR5 , 4NR6 , 4NR7 , 4NYV , 4NYW , 4NYX , 4OUF , 4TQN , 4TS8 , 4WHU , 4YK0 , 5CGP , 5DBM , 5EIC , 5ENG , 5EP7 , 5GH9 , 5H85 , 5I83 , 5I86 , 5I89 , 5I8B , 5I8G
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02135 zf-TAZ 354 430 TAZ zinc finger Family
PF02172 KIX 587 667 KIX domain Domain
PF00439 Bromodomain 1094 1180 Bromodomain Domain
PF06001 DUF902 1192 1231 Domain of Unknown Function (DUF902) Domain
PF08214 HAT_KAT11 1342 1649 Histone acetylation protein Domain
PF00569 ZZ 1701 1742 Zinc finger, ZZ type Domain
PF02135 zf-TAZ 1772 1843 TAZ zinc finger Family
PF09030 Creb_binding 2017 2114 Creb binding Domain
Sequence
MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLV
PDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGK
SPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNAN
FNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLA
ETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASK
QSMVNSLPTFPTDIKNTSVTNVPNMSQMQTSVGIVPTQAIATGPTADPEKRKLIQQQLVL
LLHAHKCQRREQANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWK
NCTRHDCPVC
LPLKNASDKRNQQTILGSPASGIQNTIGSVGTGQQNATSLSNPNPIDPSS
MQRAYAALGLPYMNQPQTQLQPQVPGQQPAQPQTHQQMRTLNPLGNNPMNIPAGGITTDQ
QPPNLISESALPTSLGATNPLMNDGSNSGNIGTLSTIPTAAPPSSTGVRKGWHEHVTQDL
RSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYK
IQKELEE
KRRSRLHKQGILGNQPALPAPGAQPPVIPQAQPVRPPNGPLSLPVNRMQVSQG
MNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMGSVPGMAISPSRMPQPPNMMGAHT
NNMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQA
SQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPT
PTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTP
LSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMKTETQAEDTEPDPGESKGEPRSE
MMEEDLQGASQVKEETDIAEQKSEPMEVDEKKPEVKVEVKEEEESSSNGTASQSTSPSQP
RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR
KLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSK
LAEVFEQEIDPVMQSLGYCC
GRKYEFSPQTLCCYGKQLCTIPRDAAYYSYQ
NRYHFCEKCFTEIQGENVTLGDDPSQPQT
TISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLKKTGRPRK
ENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVRVVASSDKTVEVKPGMKSRFV
DSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFF
RPRCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQ
EWYKKMLDKAFAERIIHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKELEQEE
EERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKNKSSISRANKKKPSMPNVSNDLSQK
LYATMEKHKEVFFVIHLHAGPVINTLPPI
VDPDPLLSCDLMDGRDAFLTLARDKHWEFSS
LRRSKWSTLCMLVELHTQGQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHAH
KM
VKWGLGLDDEGSSQGEPQSKSPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKR
VVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC
LNIKHKLRQQQIQHRLQ
QAQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAG
FPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREAQQQQHLYRVNINNS
MPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPLPQQQPMPGLPRPVI
SMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF
IKQRTAKYVANQPG
MQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQAGVPRPGVPPQQQA
MGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAG
MAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAAQMGQLGQMGQPGLG
ADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLS
NQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTGSPHPGLAVTMASSIDQGHL
GNPEQSAMLPQLNTPSRSALSSELSLVGDTTGDTLEKFVEGL
Sequence length 2442
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Mental retardation intellectual disability rs797045037, rs587783483, rs267606752 N/A
neoplasm Neoplasm rs587783502 N/A
Rubinstein-Taybi Syndrome rubinstein-taybi syndrome due to crebbp mutations, rubinstein-taybi syndrome rs587783510, rs1555483834, rs1596916327, rs797045488, rs1374436403, rs587783479, rs1596786752, rs145988918, rs587783499, rs1567263114, rs886041286, rs1596917200, rs1596948052, rs587783460, rs1596852670
View all (197 more)
N/A
Agenesis Of Corpus Callosum Corpus callosum, agenesis of rs1384496494 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Atrial Fibrillation Atrial fibrillation N/A N/A GWAS
Diffuse Lymphoma Diffuse large B-cell lymphoma DLBCL cells with genetic alterations in EP300 and CREBBP are sensitive to a HAT domain inhibitor. 33911074 CBGDA
Hennekam Syndrome Menke-Hennekam syndrome 1 N/A N/A GenCC
Hirschsprung Disease Hirschsprung disease, susceptibility to, 1 N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 30789376, 34071322
Adenocarcinoma of Lung Associate 26628108, 29141249, 33846793
Agnosia Associate 33827682
Aicardi Syndrome Associate 31857685
Alzheimer Disease Associate 27480489
Anemia Aplastic Stimulate 35274786
Anorectal Malformations Associate 36474027
Aortic Aneurysm Abdominal Associate 26767057
Arnold Chiari Malformation Associate 23432975
Arthritis Rheumatoid Associate 29217191