Gene Gene information from NCBI Gene database.
Entrez ID 1287
Gene name Collagen type IV alpha 5 chain
Gene symbol COL4A5
Synonyms (NCBI Gene)
ASLNATSATS1CA54
Chromosome X
Chromosome location Xq22.3
Summary This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. Mutations in this gene are associated with X-linked Alport syndrome, also known as hereditary nephritis. Like the other members of the typ
SNPs SNP information provided by dbSNP.
774
SNP ID Visualize variation Clinical significance Consequence
rs5973838 C>A,G,T Pathogenic Intron variant
rs104886042 G>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
rs104886043 G>A Pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
rs104886044 G>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
rs104886045 C>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
124
miRTarBase ID miRNA Experiments Reference
MIRT018772 hsa-miR-335-5p Microarray 18185580
MIRT030043 hsa-miR-26b-5p Microarray 19088304
MIRT053738 hsa-miR-29b-3p Microarray 22942087
MIRT450890 hsa-miR-199a-3p PAR-CLIP 22100165
MIRT450889 hsa-miR-199b-3p PAR-CLIP 22100165
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0005201 Function Extracellular matrix structural constituent IEA
GO:0005515 Function Protein binding IPI 32296183, 32814053
GO:0005576 Component Extracellular region IEA
GO:0005576 Component Extracellular region TAS
GO:0005581 Component Collagen trimer IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
303630 2207 ENSG00000188153
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P29400
Protein name Collagen alpha-5(IV) chain
Protein function Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.
PDB 5NAZ , 6WKU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01391 Collagen 33 118 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 81 164 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 165 223 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 283 352 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 391 449 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 491 550 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 598 659 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 659 706 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 706 766 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 754 818 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 796 854 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 854 909 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 896 958 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 960 1019 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1013 1072 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1074 1133 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1128 1189 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1190 1248 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1246 1315 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1400 1460 Collagen triple helix repeat (20 copies) Repeat
PF01413 C4 1462 1569 C-terminal tandem repeated domain in type 4 procollagen Domain
PF01413 C4 1572 1683 C-terminal tandem repeated domain in type 4 procollagen Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 2 is found in kidney.
Sequence
MKLRGVSLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDD
GIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMS
SLPGPKGNPGYPGPPG
IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQ
GPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTG
ITIGEKGN
IGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPG
PPGLDGQPGAPGLPGPPGPAGPHIPPSDE
ICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGF
PGSKGEPGDI
LTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKG
ERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT
IT
QPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP
GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG
IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM
MGPPGPPGP
LGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPN
LL
GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG
LPGQPGLI
GPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISS
IGLPGLPG
PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTP
GPPGPKGISGPPG
NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF
GNPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGP
ALEGPKGNPGPQGPP
GRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPG
LNGMK
GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI
PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP
PGPDGLQGPPGPPGTSSVAH
GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMQPLKGQSIQPF
ISRCAVCEA
PAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTRISRCQV
CMK
RT
Sequence length 1685
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1433
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Alport syndrome Likely pathogenic; Pathogenic rs2147975020, rs1353480777, rs2147777495, rs2147959392, rs104886299, rs104886303, rs2524632147, rs2524632703, rs2524305677, rs104886440, rs104886071, rs104886079, rs104886101, rs281874670, rs281874673
View all (33 more)
RCV002471103
RCV001795866
RCV001795869
RCV001795871
RCV001849648
RCV001195698
RCV003526645
RCV003887813
RCV003887818
RCV001328299
RCV001328292
RCV001328073
RCV001328297
RCV001328070
RCV001328298
RCV001328295
RCV001328141
RCV001563661
RCV001328190
RCV001328294
RCV003886366
RCV001328293
RCV001328077
RCV001328076
RCV000785979
RCV001328300
RCV001195700
RCV001195699
RCV001195697
RCV001328075
RCV002272433
RCV001328301
RCV001328072
RCV001328079
RCV001328140
RCV001328191
RCV001328139
RCV001328142
RCV001328065
RCV001328144
RCV001328071
RCV001328184
RCV001328296
RCV001328143
RCV001328068
RCV001328078
RCV001328193
RCV001328291
Alport syndrome 1 Pathogenic rs104886245 RCV005627439
Atypical hemolytic-uremic syndrome Likely pathogenic; Pathogenic rs104886189 RCV001328145
Autosomal dominant Alport syndrome Likely pathogenic; Pathogenic rs2147849728, rs104886312, rs104886189 RCV001849658
RCV001849660
RCV001849275
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs3761615, rs2272946, rs3747408, rs2273051, rs73526282 RCV005914691
RCV005888611
RCV005888616
RCV005888624
RCV005910876
Disease of glomerular basement membrane Conflicting classifications of pathogenicity rs375377003 RCV001849518
Familial cancer of breast Likely benign rs139844632 RCV005916098
Familial pancreatic carcinoma Benign rs2273051 RCV005888626
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adrenoleukodystrophy Associate 24854265
Anterior Spinal Artery Syndrome Associate 10321542, 25110662
Anti Glomerular Basement Membrane Disease Associate 31686460, 36130833, 8196274, 8264140
Atrophy Associate 38139322
Carcinoma Basal Cell Associate 34104083
Carcinoma Renal Cell Associate 33838279
Cardiomyopathy Dilated Associate 27936202
Chromosome Deletion Associate 9598718
Chronic Kidney Disease Mineral and Bone Disorder Associate 31085678, 36128480
Corneal Dystrophy Fleck Associate 25110662