Gene Gene information from NCBI Gene database.
Entrez ID 1285
Gene name Collagen type IV alpha 3 chain
Gene symbol COL4A3
Synonyms (NCBI Gene)
ATS2ATS3ATS3AATS3BBFH2
Chromosome 2
Chromosome location 2q36.3
Summary Type IV collagen, the major structural component of basement membranes, is a multimeric protein composed of 3 alpha subunits. These subunits are encoded by 6 different genes, alpha 1 through alpha 6, each of which can form a triple helix structure with 2
miRNA miRNA information provided by mirtarbase database.
61
miRTarBase ID miRNA Experiments Reference
MIRT047553 hsa-miR-10a-5p CLASH 23622248
MIRT527454 hsa-miR-548ac PAR-CLIP 22012620
MIRT527453 hsa-miR-548bb-3p PAR-CLIP 22012620
MIRT527452 hsa-miR-548d-3p PAR-CLIP 22012620
MIRT527451 hsa-miR-548h-3p PAR-CLIP 22012620
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
ZEB1 Unknown 22199242
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0005178 Function Integrin binding IDA 12682293
GO:0005178 Function Integrin binding TAS 10766752
GO:0005198 Function Structural molecule activity NAS 3025878
GO:0005201 Function Extracellular matrix structural constituent IEA
GO:0005515 Function Protein binding IPI 10212244, 12682293
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
120070 2204 ENSG00000169031
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q01955
Protein name Collagen alpha-3(IV) chain (Goodpasture antigen) [Cleaved into: Tumstatin]
Protein function Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.; Tumstatin, a cleavage fragment corresponding to t
PDB 5NB0 , 6WKU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01391 Collagen 41 104 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 97 162 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 169 223 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 282 344 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 351 412 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 386 444 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 413 478 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 482 546 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 588 648 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 699 749 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 747 809 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 788 849 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 847 905 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 892 948 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 950 1009 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 997 1060 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1061 1122 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1119 1178 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1176 1235 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1292 1352 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1379 1441 Collagen triple helix repeat (20 copies) Repeat
PF01413 C4 1446 1553 C-terminal tandem repeated domain in type 4 procollagen Domain
PF01413 C4 1556 1667 C-terminal tandem repeated domain in type 4 procollagen Domain
Tissue specificity TISSUE SPECIFICITY: Alpha 3 and alpha 4 type IV collagens are colocalized and present in kidney, eye, basement membranes of lens capsule, cochlea, lung, skeletal muscle, aorta, synaptic fibers, fetal kidney and fetal lung. PubMed:8083201 reports similar l
Sequence
MSARTAPRPQVLLLPLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSP
GQKGFTGPEGLPGPQGPKGFPGLPGLTGSKGVRGIS
GLPGFSGSPGLPGTPGNTGPYGLV
GVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKE
EDIELDAKGDPGLPGAPG
PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVI
GHKGERGVKGLTGPPGP
PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPG
KDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPT
EYYDTYQEKGDEGTPG
PPGPRGARGPQGPSGPPGVPGSPGS
SRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSP
GCAGSPGLPGSPGPPGPPGDIVFR
KGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQ
CP
YIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEK
GETLQP
EGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGD
PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGEL
SVSTPVPGPPGP
PGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL
GCPGKMGEPGLPGKPGLPGAKGEPAV
AMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPG
TPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGD
PGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAI
GPPGP
PGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEIS
HVIGDKGEPGLK
GFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPR
GDLGSTGNPGEPGLRGIPGSMGNM
GMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSE
GTRPGPPGPTGDPGLPGDMG
KKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH
GDLGFKGIKGLLGPPGIRGPPG
LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFP
GLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP
GQTGNRGPPGSRGSPGAPGPPGPPG
SHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGE
KGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLK
IISLPGSPGPPGTPGEPGMQGEPGPPGP
PGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPAT
W
TTRGFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTM
PFLFCNVNDVCNFASRNDYSYWLSTPALMPMNMAPITGRALEPYISRCTVCEG
PAIAIAV
HSQTTDIPPCPHGWISLWKGFSFIMFTSAGSEGTGQALASPGSCLEEFRASPFLECHGRG
TCNYYSNSYSFWLASLNPERMFRKPIPSTVKAGELEKIISRCQVCMK
KRH
Sequence length 1670
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2472
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Alport syndrome Likely pathogenic; Pathogenic rs1414411811, rs1559899827, rs2125936534, rs1385106410, rs761358728, rs2106164697, rs2125932297, rs755109848, rs2071832975, rs1246102682, rs2125961933, rs1185847791, rs2125972390, rs1346132592, rs2125906801
View all (54 more)
RCV001826053
RCV004789553
RCV005614532
RCV001826180
RCV001831385
RCV005614536
RCV005635180
RCV001580286
RCV004785293
RCV004785421
RCV004785404
RCV005614735
RCV005614694
RCV005635445
RCV005614740
RCV004785415
RCV001272220
RCV004786750
RCV005616482
RCV005616526
RCV005616610
RCV005616611
RCV004786642
RCV005636903
RCV004786959
RCV004786962
RCV004786996
RCV004787085
RCV001273243
RCV001273241
RCV005618359
RCV006249914
RCV002225103
RCV001833572
RCV001328055
RCV001834631
RCV004787823
RCV005632439
RCV001834658
RCV005632451
RCV001272227
RCV004788040
RCV001272225
RCV003225951
RCV004788095
RCV001272223
RCV001830467
RCV004788088
RCV001829828
RCV006249667
RCV001273240
RCV001830450
RCV005250086
RCV001835073
RCV001328056
RCV004788108
RCV001272226
RCV004788113
RCV005614441
RCV006249688
RCV004789184
RCV004789307
RCV005633809
RCV001836094
RCV001273244
RCV004789375
RCV001833919
RCV005614502
RCV001830069
RCV001328060
Alport syndrome 3b, autosomal recessive Likely pathogenic; Pathogenic rs202001097, rs2125914087, rs761358728, rs2069929443, rs1574842143, rs2125961933, rs375290088, rs2125972772, rs2073715263, rs1346132592, rs2125906801, rs1167411352, rs757341933, rs2106283830, rs1430568143
View all (99 more)
RCV005023122
RCV005860226
RCV005014528
RCV005864615
RCV005023304
RCV005023499
RCV003992591
RCV004558737
RCV005025511
RCV005025671
RCV005016969
RCV005005329
RCV005005310
RCV005023435
RCV003333777
RCV005017190
RCV005025837
RCV005003524
RCV005028274
RCV005028327
RCV005028052
RCV005028115
RCV005019567
RCV005025339
RCV005868156
RCV005868119
RCV005029908
RCV005623107
RCV005025409
RCV005029975
RCV003389143
RCV003389230
RCV005021957
RCV003389935
RCV005030103
RCV005030149
RCV005030166
RCV005254857
RCV003989270
RCV005015112
RCV005030369
RCV003993514
RCV005867785
RCV005003388
RCV005023567
RCV004549019
RCV005023570
RCV004585212
RCV004585215
RCV005004140
RCV005252872
RCV005018741
RCV005004191
RCV005027584
RCV005018877
RCV005027598
RCV005027599
RCV005004208
RCV005027613
RCV005027693
RCV005019037
RCV005019036
RCV005019108
RCV005027774
RCV005027803
RCV005019145
RCV005004329
RCV005019110
RCV005019142
RCV004796271
RCV005027818
RCV005027782
RCV005004342
RCV005019148
RCV005019132
RCV005004335
RCV005019165
RCV005004330
RCV005027786
RCV005027778
RCV005004343
RCV005027829
RCV005027781
RCV005019119
RCV005019153
RCV005027810
RCV005004348
RCV005019120
RCV005019102
RCV005004331
RCV005860127
RCV005019172
RCV005004360
RCV005019174
RCV005027840
RCV005027881
RCV004547945
RCV005029409
RCV005029447
RCV005021176
RCV005029448
RCV005029452
RCV005029483
RCV005871055
RCV005021304
RCV005021338
RCV005004995
RCV005029623
RCV005029684
RCV005029741
RCV005029785
RCV005021522
RCV005005129
RCV005005131
RCV005866932
Autosomal dominant Alport syndrome Pathogenic; Likely pathogenic rs2106226493, rs1559899827, rs202001097, rs1350835100, rs1385106410, rs761358728, rs2125956727, rs2125924714, rs2125932350, rs2072046668, rs1183958961, rs2106236091, rs2125932297, rs2125924619, rs2071832975
View all (179 more)
RCV001353239
RCV001726512
RCV005023122
RCV002499782
RCV002499809
RCV005014528
RCV005635139
RCV001391174
RCV001391173
RCV001533419
RCV001535999
RCV001544541
RCV002476872
RCV001578276
RCV001726707
RCV001801297
RCV001808156
RCV002507739
RCV005023304
RCV005023499
RCV002497998
RCV002479583
RCV005002721
RCV002507802
RCV002507775
RCV002492185
RCV002479561
RCV002479441
RCV002479685
RCV005025511
RCV005025671
RCV005016969
RCV005005329
RCV005005310
RCV005023435
RCV002466748
RCV002272123
RCV005017190
RCV002468830
RCV002468831
RCV002468833
RCV005025837
RCV002485088
RCV005003524
RCV005028274
RCV005028327
RCV005028052
RCV005028115
RCV005626725
RCV005019567
RCV005025339
RCV000416934
RCV000416827
RCV000490447
RCV005029908
RCV001029768
RCV003236639
RCV005029975
RCV003314523
RCV005021957
RCV004577585
RCV004577586
RCV005030103
RCV005030149
RCV005030166
RCV003984939
RCV003984949
RCV003991092
RCV003991169
RCV003991248
RCV003991283
RCV003991284
RCV003991303
RCV003991308
RCV003992012
RCV003992033
RCV003992050
RCV005003387
RCV001281227
RCV000019044
RCV004545912
RCV004545941
RCV004545952
RCV004545959
RCV004545967
RCV005023569
RCV004555230
RCV004555253
RCV004555292
RCV004555298
RCV004555332
RCV004555340
RCV004555342
RCV004555411
RCV004555745
RCV004556952
RCV004556956
RCV004578011
RCV000408794
RCV000408858
RCV004699171
RCV002502432
RCV000763472
RCV005018741
RCV002506176
RCV005004191
RCV000505632
RCV000505590
RCV001281222
RCV001849395
RCV005027599
RCV002496993
RCV005004208
RCV002468584
RCV005027613
RCV005027693
RCV000625624
RCV000625572
RCV000786994
RCV005027774
RCV005027803
RCV005019145
RCV001807646
RCV001198699
RCV002493101
RCV005019142
RCV004796271
RCV005027818
RCV005027782
RCV005004342
RCV005019148
RCV001281228
RCV005004335
RCV000763077
RCV001330982
RCV002485521
RCV005004330
RCV005027786
RCV000735743
RCV005027778
RCV005004343
RCV005027829
RCV000786975
RCV005019119
RCV002477495
RCV005019153
RCV005027810
RCV004788100
RCV005019120
RCV005019102
RCV005004331
RCV005019172
RCV002507181
RCV005004360
RCV005019174
RCV000786971
RCV002499210
RCV005027881
RCV000735710
RCV000735783
RCV000735738
RCV000735672
RCV005029409
RCV002500988
RCV002501014
RCV000786779
RCV000787009
RCV000786944
RCV000786901
RCV000786972
RCV000787016
RCV000786974
RCV005029452
RCV005029483
RCV000844888
RCV005029549
RCV005021304
RCV003483750
RCV001029783
RCV001029781
RCV001029865
RCV001029784
RCV001029977
RCV001029940
RCV001029938
RCV001029989
RCV001029886
RCV001029838
RCV005004995
RCV005029623
RCV001536013
RCV001089920
RCV001197525
RCV001198013
RCV002497681
RCV005029785
RCV005021522
RCV002497715
RCV001281221
RCV001281225
RCV001281226
RCV005005129
RCV005005131
Autosomal recessive Alport syndrome Likely pathogenic; Pathogenic rs1350835100, rs1385106410, rs2106250807, rs1183958961, rs2106154439, rs2125932297, rs2125924619, rs2106284079, rs2106206598, rs1286895614, rs2106235905, rs375290088, rs2106151987, rs1240838887, rs2125981235
View all (197 more)
RCV002499782
RCV002499809
RCV001391122
RCV001535999
RCV001823234
RCV002476872
RCV005861245
RCV002051740
RCV002507739
RCV002497998
RCV002479583
RCV002271709
RCV002507802
RCV002507775
RCV002492185
RCV002479561
RCV002479441
RCV002479685
RCV002290813
RCV002222946
RCV002251096
RCV002306478
RCV002306520
RCV002306570
RCV002306766
RCV002306789
RCV002306794
RCV002309592
RCV002309616
RCV002309641
RCV002309762
RCV002309779
RCV002309788
RCV002309811
RCV002309839
RCV002309868
RCV002309917
RCV002309952
RCV002307875
RCV002307930
RCV002307934
RCV002307958
RCV002307984
RCV002308006
RCV002308061
RCV002308100
RCV002308110
RCV002308161
RCV002308226
RCV002308335
RCV002309030
RCV002309103
RCV002309206
RCV002309217
RCV002309225
RCV002309257
RCV002309486
RCV002306941
RCV002306951
RCV002306999
RCV002307079
RCV002307122
RCV002307159
RCV002307289
RCV002307310
RCV002307332
RCV002307339
RCV002307341
RCV002310246
RCV002310400
RCV002310438
RCV002310522
RCV002468832
RCV002468834
RCV002485088
RCV000172875
RCV005626725
RCV000490447
RCV003123358
RCV003153073
RCV003155601
RCV000256394
RCV003236658
RCV003236659
RCV003324185
RCV003486512
RCV000019036
RCV000019037
RCV000019040
RCV000673273
RCV003226288
RCV000410611
RCV000411680
RCV000449569
RCV002506176
RCV000490752
RCV000668107
RCV002496993
RCV000668781
RCV001089908
RCV000589718
RCV001391170
RCV000665178
RCV000666006
RCV000664871
RCV000669524
RCV000672167
RCV000666899
RCV000666502
RCV000674276
RCV000668688
RCV000671366
RCV000667045
RCV000672753
RCV000674708
RCV000671880
RCV000668638
RCV000664514
RCV000666005
RCV000670747
RCV000664680
RCV000670389
RCV000672721
RCV000669553
RCV000668609
RCV000674775
RCV000673097
RCV000668884
RCV000665013
RCV000668666
RCV000673812
RCV000672536
RCV000667128
RCV000674326
RCV000666969
RCV000669678
RCV000665574
RCV000667832
RCV000674071
RCV000670997
RCV000670558
RCV000674928
RCV000665833
RCV000671855
RCV000673067
RCV000674511
RCV000667412
RCV000673983
RCV000668719
RCV000674357
RCV000673180
RCV000671890
RCV000671100
RCV000672563
RCV000669916
RCV000667462
RCV000664847
RCV000671970
RCV000667489
RCV000673520
RCV002507181
RCV003236588
RCV001251195
RCV005897286
RCV001199941
RCV000761269
RCV002501014
RCV001281283
RCV000995727
RCV001391172
RCV000790472
RCV001089907
RCV000995722
RCV000995723
RCV000995724
RCV000995726
RCV000995513
RCV000995514
RCV001002784
RCV001004075
RCV001089909
RCV001089906
RCV001199933
RCV004699214
RCV002307701
RCV002497715
RCV001281282
RCV001251155
RCV001254145
RCV001264036
RCV001264037
RCV001264038
RCV001264039
RCV001264040
RCV001264366
RCV001264367
RCV001264368
RCV001264369
RCV001264370
RCV001264371
RCV001264372
RCV001264373
RCV001263591
RCV001263592
RCV001263593
RCV001263594
RCV001263595
RCV001263596
RCV001263597
RCV001263598
RCV001263882
RCV001263883
RCV001263884
RCV001263885
RCV001263886
RCV001281348
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs869025324 -
Acute myeloid leukemia Benign rs55667591, rs115757151, rs56243460 RCV005891134
RCV005891125
RCV005891127
Atypical hemolytic-uremic syndrome Benign; Likely benign rs55667591, rs75519005, rs57611801, rs73996414 RCV002294104
RCV002294098
RCV002294101
RCV002294298
Cervical cancer Benign rs55667591 RCV005891136
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Albuminuria Associate 31537649
Alzheimer Disease Associate 11044206
Androgen Insensitivity Syndrome Associate 11044206
Anti Glomerular Basement Membrane Disease Associate 31686460, 36130833, 7783419
Asthma Inhibit 28608951
Breast Neoplasms Associate 23981902
Carcinoma Non Small Cell Lung Associate 22473740, 23108892
Carcinoma Renal Cell Associate 24002681, 33761933
Chronic Kidney Disease Mineral and Bone Disorder Associate 31085678
Collagen Diseases Associate 25514610, 30881523, 33159707