Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1281
Gene name Gene Name - the full gene name approved by the HGNC.
Collagen type III alpha 1 chain
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
COL3A1
Synonyms (NCBI Gene) Gene synonyms aliases
EDS4A, EDSVASC, PMGEDSV
Disease Acronyms (UniProt) Disease acronyms from UniProt database
EDSVASC, PMGEDSV
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q32.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes the pro-alpha1 chains of type III collagen, a fibrillar collagen that is found in extensible connective tissues such as skin, lung, uterus, intestine and the vascular system, frequently in association with type I collagen. Mutations in t
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1801183 C>A,T Likely-benign, conflicting-interpretations-of-pathogenicity, benign, benign-likely-benign Coding sequence variant, missense variant
rs111391222 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity, benign, likely-benign Coding sequence variant, missense variant
rs111505097 G>A,T Pathogenic Coding sequence variant, missense variant
rs111840783 A>G Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity, benign, benign-likely-benign Coding sequence variant, missense variant
rs111929073 G>A,C,T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000927 hsa-miR-29c-3p Luciferase reporter assay 18390668
MIRT000927 hsa-miR-29c-3p Luciferase reporter assay 18390668
MIRT000927 hsa-miR-29c-3p Luciferase reporter assay 18390668
MIRT000927 hsa-miR-29c-3p Luciferase reporter assay 18390668
MIRT000927 hsa-miR-29c-3p Luciferase reporter assay 18390668
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development IEA
GO:0002020 Function Protease binding IPI 19932771
GO:0005178 Function Integrin binding IMP 9573018
GO:0005178 Function Integrin binding NAS 14970208
GO:0005201 Function Extracellular matrix structural constituent IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
120180 2201 ENSG00000168542
Protein
UniProt ID P02461
Protein name Collagen alpha-1(III) chain
Protein function Collagen type III occurs in most soft connective tissues along with type I collagen. Involved in regulation of cortical development. Is the major ligand of ADGRG1 in the developing brain and binding to ADGRG1 inhibits neuronal migration and acti
PDB 2V53 , 3DMW , 4AE2 , 4AEJ , 4AK3 , 4GYX , 6FZV , 6FZW , 7WWR , 7WWS , 7XAN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00093 VWC 32 88 von Willebrand factor type C domain Family
PF01391 Collagen 167 233 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 294 368 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 354 413 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 474 533 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 533 593 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 954 1026 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1077 1136 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1137 1196 Collagen triple helix repeat (20 copies) Repeat
PF01410 COLFI 1230 1465 Fibrillar collagen C-terminal domain Family
Sequence
MMSFVQKGSWLLLALLHPTIILAQQEAVEGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDDQELDCPNPEIPFGECCAVC
PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPG
PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES
GRPGRPG
ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV
GPAGSPG
SNGAPGQR
GEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGAR
GPPGPAG
ANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPG
AAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG
PGMRGMPG
SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKN
GERGGPG
GPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPG
PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAG
TPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPG
VAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPG
KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAG
PPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDG
SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG
SRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPA
GPRG
PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPC
CGGV
GAAAIAGIGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPAR
NCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISANPLNVPRKHWWTDSS
AEKKHVWFGESMDGGFQFSYGNPELPEDVLDVHLAFLRLLSSRASQNITYHCKNSIAYMD
QASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLP
IVDIAPYDIGGPDQEFGVDVGPVCF
L
Sequence length 1466
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Unknown
Disease term Disease name Evidence References Source
Ehlers-Danlos Syndrome autosomal dominant Ehlers-Danlos syndrome, vascular type, polymicrogyria with or without vascular-type Ehlers-Danlos syndrome, Ehlers-Danlos syndrome, vascular type GenCC
Uterine Fibroids Uterine Fibroids GWAS
Associations from Text Mining
Disease Name Relationship Type References
Acute Coronary Syndrome Associate 12149201
Adenocarcinoma Associate 32255255, 33371142, 36148899
Adenocarcinoma of Lung Associate 30106131
Adenoma Associate 30175151
Alzheimer Disease Associate 33083483
Anemia Diamond Blackfan Associate 26258650
Aneurysm Associate 2243125
Aneurysm False Associate 9546243
Aneurysm Ruptured Associate 11577371
Angina Stable Associate 12149201