Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1080
Gene name Gene Name - the full gene name approved by the HGNC.
CF transmembrane conductance regulator
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CFTR
Synonyms (NCBI Gene) Gene synonyms aliases
ABC35, ABCC7, CF, CFTR/MRP, MRP7, TNR-CFTR, dJ760C5.1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CF
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q31.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the ATP-binding cassette (ABC) transporter superfamily. The encoded protein functions as a chloride channel, making it unique among members of this protein family, and controls ion and water secretion and absorption in epithe
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1800073 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance, benign-likely-benign, likely-benign Missense variant, coding sequence variant
rs1800074 A>G,T Pathogenic Missense variant, coding sequence variant
rs1800076 G>A,T Benign-likely-benign, conflicting-interpretations-of-pathogenicity, not-provided, benign, uncertain-significance, pathogenic Missense variant, coding sequence variant
rs1800077 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs1800079 G>A Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT007361 hsa-miR-433-3p Luciferase reporter assay 23555973
MIRT007363 hsa-miR-509-3p Luciferase reporter assay 23555973
MIRT017834 hsa-miR-335-5p Microarray 18185580
MIRT021816 hsa-miR-132-3p Microarray 17612493
MIRT054057 hsa-miR-101-3p Immunoblot, Immunohistochemistry, Luciferase reporter assay, qRT-PCR 23226399
Transcription factors
Transcription factor Regulation Reference
ATF1 Activation 10075672
CDX2 Activation 22671145
CUX1 Unknown 10075672
FOXA1 Repression 24440874
FOXA2 Repression 24440874
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005254 Function Chloride channel activity IDA 11524016, 11707463, 15010471, 18570918, 19019741, 22178883
GO:0005254 Function Chloride channel activity IMP 19621064, 24885604
GO:0005260 Function Intracellularly ATP-gated chloride channel activity IMP 8910473
GO:0005260 Function Intracellularly ATP-gated chloride channel activity NAS 11707463
GO:0005515 Function Protein binding IPI 9671706, 9792704, 11707463, 12369822, 12471024, 15247260, 16203867, 16546175, 16901789, 17110338, 17244609, 18555783, 19289574, 19878303, 20658517, 21884936, 22038833, 22121115, 22178883, 22768251, 25661196, 25712891, 27092946, 29924966
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602421 1884 ENSG00000001626
Protein
UniProt ID P13569
Protein name Cystic fibrosis transmembrane conductance regulator (CFTR) (ATP-binding cassette sub-family C member 7) (Channel conductance-controlling ATPase) (EC 5.6.1.6) (cAMP-dependent chloride channel)
Protein function Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis (PubMed:26823428). Mediates the transport of chloride ions across the cell membrane (PubMed:10792060, PubMed:115240
PDB 1XMI , 1XMJ , 2BBO , 2BBS , 2BBT , 2LOB , 2PZE , 2PZF , 2PZG , 3GD7 , 3ISW , 4WZ6 , 5D2D , 5D3E , 5D3F , 5TF7 , 5TF8 , 5TFA , 5TFB , 5TFC , 5TFD , 5TFF , 5TFG , 5TFI , 5TFJ , 5TGK , 5UAK , 6GJQ , 6GJS , 6GJU , 6GK4 , 6GKD , 6HEP , 6MSM , 6O1V , 6O2P , 6UK1 , 6WBS , 6ZE1 , 7QI1 , 7SV7 , 7SVD , 7SVR , 8EIG , 8EIO , 8EIQ , 8EJ1 , 8FZQ , 8GLS , 8UBR , 8V7Z
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00664 ABC_membrane 81 350 ABC transporter transmembrane region Family
PF00005 ABC_tran 441 576 ABC transporter Domain
PF14396 CFTR_R 639 849 Cystic fibrosis TM conductance regulator (CFTR), regulator domain Domain
PF00664 ABC_membrane 862 1147 ABC transporter transmembrane region Family
PF00005 ABC_tran 1227 1374 ABC transporter Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the respiratory airway, including bronchial epithelium, and in the female reproductive tract, including oviduct (at protein level) (PubMed:15716351, PubMed:22207244). Detected in pancreatic intercalated ducts in the exocri
Sequence
MQRSPLEKASVVSKLFFSWTRPILRKGYRQRLELSDIYQIPSVDSADNLSEKLEREWDRE
LASKKNPKLINALRRCFFWRFMFYGIFLYLGEVTKAVQPLLLGRIIASYDPDNKEERSIA
IYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMFSLIYKKTLKLSSRVLDKISIGQL
VSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWELLQASAFCGLGFLIVLALFQAGL
GRMMMKYRDQRAGKISERLVITSEMIENIQSVKAYCWEEAMEKMIENLRQTELKLTRKAA
YVRYFNSSAFFFSGFFVVFLSVLPYALIKGIILRKIFTTISFCIVLRMAV
TRQFPWAVQT
WYDSLGAINKIQDFLQKQEYKTLEYNLTTTEVVMENVTAFWEEGFGELFEKAKQNNNNRK
TSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEG
KIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG
YLDVLTEKEIFESCVCKLMANKTR
ILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNS
ILTETLHRFSLEGDAPVSWTETKKQSFKQTGEFGEKRKNSILNPINSIRKFSIVQKTPLQ
MNGIEEDSDEPLERRLSLVPDSEQGEAILPRISVISTGPTLQARRRQSVLNLMTHSVNQG
QNIHRKTTASTRKVSLAPQANLTELDIYSRRLSQETGLEISEEINEEDLKECFFDDMESI
PAVTTWNTY
LRYITVHKSLIFVLIWCLVIFLAEVAASLVVLWLLGNTPLQDKGNSTHSRN
NSYAVIITSTSSYYVFYIYVGVADTLLAMGFFRGLPLVHTLITVSKILHHKMLHSVLQAP
MSTLNTLKAGGILNRFSKDIAILDDLLPLTIFDFIQLLLIVIGAIAVVAVLQPYIFVATV
PVIVAFIMLRAYFLQTSQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHK
ALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGEGEGRVGIILTLAMNIM
STLQWAV
NSSIDVDSLMRSVSRVFKFIDMPTEGKPTKSTKPYKNGQLSKVMIIENSHVKK
DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL
LNTEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVAD
EVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA
HLDPVT
YQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQA
ISPSDRVKLFPHRNSSKCKSKPQIAALKEETEEEVQDTRL
Sequence length 1480
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Unknown
Disease term Disease name Evidence References Source
Gout Gout GWAS
Coronary Heart Disease Coronary Heart Disease GWAS
Coronary artery disease Coronary artery disease GWAS
Metabolic Syndrome Metabolic Syndrome GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 14534336
Abortion Spontaneous Associate 24559724
Acidemia isovaleric Associate 31456498
Acute Lung Injury Inhibit 17580309
Acute Lung Injury Associate 22890249
Adenocarcinoma of Lung Associate 30384810, 33879658, 35134493, 36400857, 37644544
Adenocarcinoma of Lung Inhibit 35715537
Adrenal Insufficiency Associate 27157324
Airway Obstruction Associate 16361706, 16778407
Alcohol Related Disorders Associate 18676185, 21658649, 22020151, 23555973, 25443471, 26671754, 28196530, 34196078, 38508949