Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs Other IDs
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	91860
Gene name Gene Name - the full gene name approved by the HGNC.	Calmodulin like 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	CALML4
Synonyms (NCBI Gene) Gene synonyms aliases	NY-BR-20
Chromosome Chromosome number	15
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	15q23

Show/Hide all(222)

miRTarBase ID	miRNA	Experiments	Reference
MIRT720332	hsa-miR-4778-5p	HITS-CLIP	19536157
MIRT720331	hsa-miR-4742-3p	HITS-CLIP	19536157
MIRT720330	hsa-miR-3686	HITS-CLIP	19536157
MIRT524571	hsa-miR-190b	HITS-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	HITS-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	HITS-CLIP	21572407
MIRT524568	hsa-miR-511-3p	HITS-CLIP	21572407
MIRT524567	hsa-miR-223-5p	HITS-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	HITS-CLIP	21572407
MIRT543021	hsa-miR-340-5p	HITS-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	HITS-CLIP	21572407
MIRT524564	hsa-miR-3924	HITS-CLIP	21572407
MIRT524563	hsa-miR-574-5p	HITS-CLIP	21572407
MIRT524567	hsa-miR-223-5p	PAR-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	21572407
MIRT558969	hsa-miR-1277-5p	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	21572407
MIRT524568	hsa-miR-511-3p	PAR-CLIP	21572407
MIRT543021	hsa-miR-340-5p	PAR-CLIP	21572407
MIRT524564	hsa-miR-3924	PAR-CLIP	21572407
MIRT524563	hsa-miR-574-5p	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	21572407
MIRT524568	hsa-miR-511-3p	PAR-CLIP	21572407
MIRT524563	hsa-miR-574-5p	PAR-CLIP	21572407
MIRT524567	hsa-miR-223-5p	PAR-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	21572407
MIRT543021	hsa-miR-340-5p	PAR-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	21572407
MIRT524564	hsa-miR-3924	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	23446348
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	23446348
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	23446348
MIRT524568	hsa-miR-511-3p	PAR-CLIP	23446348
MIRT524567	hsa-miR-223-5p	PAR-CLIP	23446348
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	23446348
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	23446348
MIRT524564	hsa-miR-3924	PAR-CLIP	23446348
MIRT524563	hsa-miR-574-5p	PAR-CLIP	23446348
MIRT720332	hsa-miR-4778-5p	HITS-CLIP	19536157
MIRT720331	hsa-miR-4742-3p	HITS-CLIP	19536157
MIRT720330	hsa-miR-3686	HITS-CLIP	19536157
MIRT524571	hsa-miR-190b	HITS-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	HITS-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	HITS-CLIP	21572407
MIRT524568	hsa-miR-511-3p	HITS-CLIP	21572407
MIRT524567	hsa-miR-223-5p	HITS-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	HITS-CLIP	21572407
MIRT543021	hsa-miR-340-5p	HITS-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	HITS-CLIP	21572407
MIRT524564	hsa-miR-3924	HITS-CLIP	21572407
MIRT524563	hsa-miR-574-5p	HITS-CLIP	21572407
MIRT524567	hsa-miR-223-5p	PAR-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	21572407
MIRT558969	hsa-miR-1277-5p	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	21572407
MIRT524568	hsa-miR-511-3p	PAR-CLIP	21572407
MIRT543021	hsa-miR-340-5p	PAR-CLIP	21572407
MIRT524564	hsa-miR-3924	PAR-CLIP	21572407
MIRT524563	hsa-miR-574-5p	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	21572407
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	21572407
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	21572407
MIRT524568	hsa-miR-511-3p	PAR-CLIP	21572407
MIRT524563	hsa-miR-574-5p	PAR-CLIP	21572407
MIRT524567	hsa-miR-223-5p	PAR-CLIP	21572407
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	21572407
MIRT543021	hsa-miR-340-5p	PAR-CLIP	21572407
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	21572407
MIRT524564	hsa-miR-3924	PAR-CLIP	21572407
MIRT524571	hsa-miR-190b	PAR-CLIP	23446348
MIRT524570	hsa-miR-190a-5p	PAR-CLIP	23446348
MIRT524569	hsa-miR-5011-5p	PAR-CLIP	23446348
MIRT524568	hsa-miR-511-3p	PAR-CLIP	23446348
MIRT524567	hsa-miR-223-5p	PAR-CLIP	23446348
MIRT524566	hsa-miR-6867-5p	PAR-CLIP	23446348
MIRT524565	hsa-miR-190a-3p	PAR-CLIP	23446348
MIRT524564	hsa-miR-3924	PAR-CLIP	23446348
MIRT524563	hsa-miR-574-5p	PAR-CLIP	23446348
MIRT859552	hsa-let-7a	CLIP-seq
MIRT859553	hsa-let-7b	CLIP-seq
MIRT859554	hsa-let-7c	CLIP-seq
MIRT859555	hsa-let-7d	CLIP-seq
MIRT859556	hsa-let-7e	CLIP-seq
MIRT859557	hsa-let-7f	CLIP-seq
MIRT859558	hsa-let-7g	CLIP-seq
MIRT859559	hsa-let-7i	CLIP-seq
MIRT859560	hsa-miR-103a	CLIP-seq
MIRT859561	hsa-miR-107	CLIP-seq
MIRT859562	hsa-miR-1301	CLIP-seq
MIRT859563	hsa-miR-1304	CLIP-seq
MIRT859564	hsa-miR-1343	CLIP-seq
MIRT859565	hsa-miR-202	CLIP-seq
MIRT859566	hsa-miR-3150a-3p	CLIP-seq
MIRT859567	hsa-miR-3155	CLIP-seq
MIRT859568	hsa-miR-3155b	CLIP-seq
MIRT859569	hsa-miR-3175	CLIP-seq
MIRT859570	hsa-miR-3653	CLIP-seq
MIRT859571	hsa-miR-3689d	CLIP-seq
MIRT859572	hsa-miR-4458	CLIP-seq
MIRT859573	hsa-miR-4500	CLIP-seq
MIRT859574	hsa-miR-4667-5p	CLIP-seq
MIRT859575	hsa-miR-4700-5p	CLIP-seq
MIRT859576	hsa-miR-4720-3p	CLIP-seq
MIRT859577	hsa-miR-4775	CLIP-seq
MIRT859578	hsa-miR-4795-5p	CLIP-seq
MIRT859579	hsa-miR-484	CLIP-seq
MIRT859580	hsa-miR-5047	CLIP-seq
MIRT859581	hsa-miR-578	CLIP-seq
MIRT859582	hsa-miR-590-3p	CLIP-seq
MIRT859583	hsa-miR-939	CLIP-seq
MIRT859584	hsa-miR-98	CLIP-seq
MIRT859585	hsa-miR-128	CLIP-seq
MIRT859586	hsa-miR-15a	CLIP-seq
MIRT859587	hsa-miR-15b	CLIP-seq
MIRT859588	hsa-miR-16	CLIP-seq
MIRT859589	hsa-miR-195	CLIP-seq
MIRT859590	hsa-miR-424	CLIP-seq
MIRT859591	hsa-miR-4747-5p	CLIP-seq
MIRT859592	hsa-miR-497	CLIP-seq
MIRT859593	hsa-miR-922	CLIP-seq
MIRT1920335	hsa-miR-204	CLIP-seq
MIRT1920336	hsa-miR-211	CLIP-seq
MIRT1920337	hsa-miR-3651	CLIP-seq
MIRT1920338	hsa-miR-4446-5p	CLIP-seq
MIRT1920339	hsa-miR-4755-5p	CLIP-seq
MIRT1920340	hsa-miR-623	CLIP-seq
MIRT1920335	hsa-miR-204	CLIP-seq
MIRT1920336	hsa-miR-211	CLIP-seq
MIRT1920337	hsa-miR-3651	CLIP-seq
MIRT1920338	hsa-miR-4446-5p	CLIP-seq
MIRT1920339	hsa-miR-4755-5p	CLIP-seq
MIRT1920340	hsa-miR-623	CLIP-seq
MIRT859560	hsa-miR-103a	CLIP-seq
MIRT859561	hsa-miR-107	CLIP-seq
MIRT1955152	hsa-miR-1206	CLIP-seq
MIRT1955153	hsa-miR-124	CLIP-seq
MIRT859585	hsa-miR-128	CLIP-seq
MIRT859562	hsa-miR-1301	CLIP-seq
MIRT859564	hsa-miR-1343	CLIP-seq
MIRT859586	hsa-miR-15a	CLIP-seq
MIRT859587	hsa-miR-15b	CLIP-seq
MIRT859588	hsa-miR-16	CLIP-seq
MIRT859589	hsa-miR-195	CLIP-seq
MIRT1955154	hsa-miR-203	CLIP-seq
MIRT1955155	hsa-miR-224	CLIP-seq
MIRT1955156	hsa-miR-27a	CLIP-seq
MIRT1955157	hsa-miR-27b	CLIP-seq
MIRT1955158	hsa-miR-3129-3p	CLIP-seq
MIRT859566	hsa-miR-3150a-3p	CLIP-seq
MIRT1955159	hsa-miR-3160-5p	CLIP-seq
MIRT859569	hsa-miR-3175	CLIP-seq
MIRT859571	hsa-miR-3689d	CLIP-seq
MIRT1955160	hsa-miR-3714	CLIP-seq
MIRT1955161	hsa-miR-3910	CLIP-seq
MIRT859590	hsa-miR-424	CLIP-seq
MIRT1955162	hsa-miR-4317	CLIP-seq
MIRT1955163	hsa-miR-4422	CLIP-seq
MIRT1955164	hsa-miR-4436a	CLIP-seq
MIRT1955165	hsa-miR-4652-3p	CLIP-seq
MIRT859574	hsa-miR-4667-5p	CLIP-seq
MIRT859575	hsa-miR-4700-5p	CLIP-seq
MIRT859576	hsa-miR-4720-3p	CLIP-seq
MIRT1955166	hsa-miR-4729	CLIP-seq
MIRT1955167	hsa-miR-4735-5p	CLIP-seq
MIRT859577	hsa-miR-4775	CLIP-seq
MIRT859592	hsa-miR-497	CLIP-seq
MIRT859580	hsa-miR-5047	CLIP-seq
MIRT1955168	hsa-miR-506	CLIP-seq
MIRT859581	hsa-miR-578	CLIP-seq
MIRT859582	hsa-miR-590-3p	CLIP-seq
MIRT1955169	hsa-miR-621	CLIP-seq
MIRT1955170	hsa-miR-892b	CLIP-seq
MIRT859583	hsa-miR-939	CLIP-seq
MIRT859586	hsa-miR-15a	CLIP-seq
MIRT859587	hsa-miR-15b	CLIP-seq
MIRT859588	hsa-miR-16	CLIP-seq
MIRT859589	hsa-miR-195	CLIP-seq
MIRT2192832	hsa-miR-219-2-3p	CLIP-seq
MIRT2192833	hsa-miR-2276	CLIP-seq
MIRT2192834	hsa-miR-3169	CLIP-seq
MIRT859590	hsa-miR-424	CLIP-seq
MIRT2192835	hsa-miR-4268	CLIP-seq
MIRT2192836	hsa-miR-4448	CLIP-seq
MIRT2192837	hsa-miR-4515	CLIP-seq
MIRT2192838	hsa-miR-4640-5p	CLIP-seq
MIRT2192839	hsa-miR-4686	CLIP-seq
MIRT2192840	hsa-miR-4696	CLIP-seq
MIRT2192841	hsa-miR-4726-5p	CLIP-seq
MIRT859591	hsa-miR-4747-5p	CLIP-seq
MIRT859592	hsa-miR-497	CLIP-seq
MIRT2192842	hsa-miR-767-3p	CLIP-seq
MIRT859593	hsa-miR-922	CLIP-seq
MIRT2446099	hsa-miR-122	CLIP-seq
MIRT2446100	hsa-miR-150	CLIP-seq
MIRT1955154	hsa-miR-203	CLIP-seq
MIRT2446101	hsa-miR-223	CLIP-seq
MIRT1955158	hsa-miR-3129-3p	CLIP-seq
MIRT2446102	hsa-miR-3133	CLIP-seq
MIRT2446103	hsa-miR-3149	CLIP-seq
MIRT2446104	hsa-miR-3163	CLIP-seq
MIRT2446105	hsa-miR-3647-3p	CLIP-seq
MIRT2446106	hsa-miR-3682-5p	CLIP-seq
MIRT2446107	hsa-miR-4328	CLIP-seq
MIRT2446108	hsa-miR-4694-3p	CLIP-seq
MIRT2446109	hsa-miR-4697-3p	CLIP-seq
MIRT2446110	hsa-miR-4699-3p	CLIP-seq
MIRT2446111	hsa-miR-4713-5p	CLIP-seq
MIRT2446112	hsa-miR-532-3p	CLIP-seq
MIRT2446113	hsa-miR-548k	CLIP-seq
MIRT2446114	hsa-miR-548n	CLIP-seq
MIRT2446115	hsa-miR-548t	CLIP-seq
MIRT2446116	hsa-miR-568	CLIP-seq
MIRT2446107	hsa-miR-4328	CLIP-seq
MIRT2495975	hsa-miR-4799-5p	CLIP-seq

Show/Hide all(10)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000226	Process	Microtubule cytoskeleton organization	IBA
GO:0005509	Function	Calcium ion binding	IBA
GO:0005509	Function	Calcium ion binding	IEA
GO:0005737	Component	Cytoplasm	IBA
GO:0005902	Component	Microvillus	IDA	32209652
GO:0005902	Component	Microvillus	IEA
GO:0030234	Function	Enzyme regulator activity	IBA
GO:0032028	Function	Myosin head/neck binding	IPI	32209652
GO:0042995	Component	Cell projection	IEA
GO:1904970	Process	Brush border assembly	IDA	32209652

MIM	HGNC	e!Ensembl
620520	18445	ENSG00000129007

Protein

UniProt ID

Q96GE6

Protein name

Calmodulin-like protein 4 (Serologically defined breast cancer antigen NY-BR-20)

Protein function

As part of the intermicrovillar adhesion complex/IMAC plays a role in epithelial brush border differentiation, controlling microvilli organization and length. Acts as a light chain for MYO7B and is required for efficient targeting of the IMAC to

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF13499	EF-hand_7	53 → 117	EF-hand domain pair	Domain
PF13499	EF-hand_7	127 → 190	EF-hand domain pair	Domain

Tissue specificity

TISSUE SPECIFICITY: [Isoform 1]: Expressed in the intestinal tract. {ECO:0000269|PubMed:32209652}.; TISSUE SPECIFICITY: [Isoform 6]: Dominant transcript in the intestinal tract. {ECO:0000269|PubMed:32209652}.

Sequence

MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECF
SLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQI
KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV
KYDEFIHKITLPGRDY

Sequence length

196

Interactions

View interactions

CALML4 (calmodulin like 4)