Gene Gene information from NCBI Gene database.
Entrez ID 790
Gene name Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Gene symbol CAD
Synonyms (NCBI Gene)
CDG1ZDEE50EIEE50GATD4
Chromosome 2
Chromosome location 2p23.3
Summary The de novo synthesis of pyrimidine nucleotides is required for mammalian cells to proliferate. This gene encodes a trifunctional protein which is associated with the enzymatic activities of the first 3 enzymes in the 6-step pathway of pyrimidine biosynth
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs62130681 C>A,T Pathogenic Coding sequence variant, stop gained, synonymous variant
rs139332887 G>A Likely-pathogenic Coding sequence variant, missense variant
rs202227357 A>G Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs751610198 T>G Pathogenic, likely-pathogenic Genic upstream transcript variant, coding sequence variant, missense variant
rs763410987 G>A Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
114
miRTarBase ID miRNA Experiments Reference
MIRT023598 hsa-miR-1-3p Proteomics 18668040
MIRT025309 hsa-miR-34a-5p Proteomics 21566225
MIRT028960 hsa-miR-26b-5p Microarray 19088304
MIRT049353 hsa-miR-92a-3p CLASH 23622248
MIRT045293 hsa-miR-186-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
HDAC2 Unknown 14559996
MYC Unknown 10931841;17706770
SMARCA4 Unknown 14559996
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
80
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001889 Process Liver development IEA
GO:0003824 Function Catalytic activity IEA
GO:0004070 Function Aspartate carbamoyltransferase activity IBA
GO:0004070 Function Aspartate carbamoyltransferase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
114010 1424 ENSG00000084774
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P27708
Protein name Multifunctional protein CAD (Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase) [Includes: Glutamine-dependent carbamoyl phosphate synthase (EC 6.3.5.5); Glutamine amidotransferase (GATase) (GLNase) (EC 3.5.1.2); Ammonium-dependen
Protein function Multifunctional protein that encodes the first 3 enzymatic activities of the de novo pyrimidine pathway: carbamoylphosphate synthetase (CPSase; EC 6.3.5.5), aspartate transcarbamylase (ATCase; EC 2.1.3.2) and dihydroorotase (DHOase; EC 3.5.2.3).
PDB 4BY3 , 4C6B , 4C6C , 4C6D , 4C6E , 4C6F , 4C6I , 4C6J , 4C6K , 4C6L , 4C6M , 4C6N , 4C6O , 4C6P , 4C6Q , 5G1N , 5G1O , 5G1P , 5YNZ , 6HFD , 6HFE , 6HFF , 6HFH , 6HFI , 6HFJ , 6HFK , 6HFL , 6HFN , 6HFP , 6HFQ , 6HFR , 6HFS , 6HFU , 6HG1 , 8GVZ , 8GW0 , 8PBE , 8PBG , 8PBH , 8PBI , 8PBJ , 8PBK , 8PBM , 8PBN , 8PBP , 8PBQ , 8PBR , 8PBS , 8PBT , 8PBU , 9FS1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00988 CPSase_sm_chain 1 138 Carbamoyl-phosphate synthase small chain, CPSase domain Domain
PF00117 GATase 179 356 Glutamine amidotransferase class-I Domain
PF02786 CPSase_L_D2 514 718 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain
PF02787 CPSase_L_D3 800 881 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Domain
PF02786 CPSase_L_D2 1047 1250 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain
PF02142 MGS 1327 1428 MGS-like domain Domain
PF01979 Amidohydro_1 1462 1745 Amidohydrolase family Domain
PF02729 OTCace_N 1924 2065 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Domain
PF00185 OTCace 2071 2221 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Domain
Sequence
MAALVLEDGSVLRGQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYKAQILVLTYPLIGNY
GIPPDEMDEFGLCKWFESSGIHVAALVVGECCPTPSHWSATRTLHEWLQQHGIPGLQGVD
TRELTKKLREQGSLLGKL
VQNGTEPSSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILA
LDCGLKYNQIRCLCQRGAEVTVVPWDHALDSQEYEGLFLSNGPGDPASYPSVVSTLSRVL
SEPNPRPVFGICLGHQLLALAIGAKTYKMRYGNRGHNQPCLLVGSGRCFLTSQNHGFAVE
TDSLPADWAPLFTNANDGSNEGIVHNSLPFFSVQFHPEHQAGPSDMELLFDIFLET
VKEA
TAGNPGGQTVRERLTERLCPPGIPTPGSGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAI
KALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQT
ALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQ
AQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEI
EYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLG
IVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPEL
RN
SVTGGTAAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKAL
RMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRM
KRIIAHAQLLEQHRGQPLPPDLLQQAKCLGFSDKQIALAVL
STELAVRKLRQELGICPAV
KQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPHVLVLGSGVYRIGSSVEFDWCAVGCIQ
QLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLP
NNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQT
VGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAV
ASDGVVAAIAISEHVENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFN
LQLIAKDDQLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPV
GLMTGSGVVG
VKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEAYLKAMLSTGFKIPKKNILLTIG
SYKNKSELLPTVRLLESLGYSLYASLGTADFYTEHGVKVTAVDWHFEEAVDGECPPQRSI
LEQLAEKNFELVINLSMRGAGGRRLSSFVTKGYRTRRLAADFSVPLII
DIKCTKLFVEAL
GQIGPAPPLKVHVDCMTSQKLVRLPGLIDVHVHLREPGGTHKEDFASGTAAALAGGITMV
CAMPNTRPPIIDAPALALAQKLAEAGARCDFALFLGASSENAGTLGTVAGSAAGLKLYLN
ETFSELRLDSVVQWMEHFETWPSHLPIVAHAEQQTVAAVLMVAQLTQRSVHICHVARKEE
ILLIKAAKARGLPVTCEVAPHHLFLSHDDLERLGPGKGEVRPELGSRQDVEALWENMAVI
DCFASDHAPHTLEEKCGSRPPPGFPGLETMLPLLLTAVSEGRLSLDDLLQRLHHNPRRIF
HLPPQ
EDTYVEVDLEHEWTIPSHMPFSKAHWTPFEGQKVKGTVRRVVLRGEVAYIDGQVL
VPPGYGQDVRKWPQGAVPQLPPSAPATSEMTTTPERPRRGIPGLPDGRFHLPPRIHRASD
PGLPAEEPKEKSSRKVAEPELMGTPDGTCYPPPPVPRQASPQNLGTPGLLHPQTSPLLHS
LVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSF
AAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRR
PVINAGDGVGEHPTQALLDIFTIRE
ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVS
LRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEA
CFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLAT
V
LGRF
Sequence length 2225
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
163
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Developmental and epileptic encephalopathy, 50 Likely pathogenic; Pathogenic rs2148080342, rs1475014505, rs1159635090, rs769567624, rs2465293335, rs751610198, rs1057519262, rs62130681, rs139332887, rs1572423883, rs1676249686, rs1676113645 RCV001420666
RCV002279765
RCV005023404
RCV000185620
RCV004594904
RCV000415540
RCV000415584
RCV000415514
RCV000986606
RCV000986604
RCV001196647
RCV005029846
Infantile epileptic dyskinetic encephalopathy Likely pathogenic; Pathogenic rs2465322898, rs139332887 RCV002302513
RCV001778976
Ovarian serous cystadenocarcinoma Likely pathogenic rs757585784 RCV005930230
Pancreatic adenocarcinoma Likely pathogenic rs2465306442 RCV005930648
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Uncertain significance rs73921471, rs1184277935 RCV005915938
RCV005924092
CAD-related disorder Likely benign; Benign; Conflicting classifications of pathogenicity; Uncertain significance rs760485703, rs2304684, rs771233542, rs376049827, rs199692135, rs571278168, rs202191629, rs371380215, rs367628714, rs771346392, rs186063223, rs146093881, rs529547258, rs748683362, rs753824069
View all (31 more)
RCV003928875
RCV003984071
RCV003941196
RCV004753443
RCV004753464
RCV003958543
RCV003978592
RCV004753526
RCV003895943
RCV003923725
RCV003960884
RCV003951082
RCV003903480
RCV003978774
RCV003895944
RCV003978587
RCV003911182
RCV003933380
RCV003951084
RCV003973440
RCV003898483
RCV003402147
RCV003984395
RCV003909064
RCV003972029
RCV003976951
RCV003912604
RCV003928497
RCV003970821
RCV004753150
RCV003906042
RCV003936063
RCV003972913
RCV003968151
RCV003940566
RCV003968000
RCV003948356
RCV003958194
RCV003910740
RCV003912958
RCV004753103
RCV003968403
RCV003923285
RCV003942913
RCV003936205
RCV003953409
Cervical cancer Uncertain significance; Likely benign rs1435281530, rs151119882 RCV005928581
RCV005906186
Congenital anomaly of face Uncertain significance rs1676344855 RCV001030800