Gene Gene information from NCBI Gene database.
Entrez ID 445
Gene name Argininosuccinate synthase 1
Gene symbol ASS1
Synonyms (NCBI Gene)
ASSCTLN1
Chromosome 9
Chromosome location 9q34.11
Summary The protein encoded by this gene catalyzes the penultimate step of the arginine biosynthetic pathway. There are approximately 10 to 14 copies of this gene including the pseudogenes scattered across the human genome, among which the one located on chromoso
SNPs SNP information provided by dbSNP.
71
SNP ID Visualize variation Clinical significance Consequence
rs35269064 G>A,T Pathogenic, likely-benign, benign Missense variant, coding sequence variant
rs121908636 G>A Pathogenic-likely-pathogenic Coding sequence variant, missense variant
rs121908637 G>A Pathogenic, uncertain-significance Coding sequence variant, missense variant
rs121908638 G>A,T Conflicting-interpretations-of-pathogenicity, pathogenic, pathogenic-likely-pathogenic Coding sequence variant, missense variant
rs121908639 G>A,T Pathogenic-likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
498
miRTarBase ID miRNA Experiments Reference
MIRT050346 hsa-miR-25-3p CLASH 23622248
MIRT049535 hsa-miR-92a-3p CLASH 23622248
MIRT043101 hsa-miR-324-5p CLASH 23622248
MIRT542076 hsa-miR-8485 HITS-CLIP 21572407
MIRT542075 hsa-miR-603 HITS-CLIP 21572407
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
HIF1A Activation 19934275
MYC Activation 19934275
SP4 Activation 19934275
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
70
GO ID Ontology Definition Evidence Reference
GO:0000050 Process Urea cycle IBA
GO:0000050 Process Urea cycle IEA
GO:0000050 Process Urea cycle IMP 7977368, 8792870, 18473344, 27287393
GO:0000052 Process Citrulline metabolic process IMP 7977368
GO:0000053 Process Argininosuccinate metabolic process IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603470 758 ENSG00000130707
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00966
Protein name Argininosuccinate synthase (EC 6.3.4.5) (Citrulline--aspartate ligase)
Protein function One of the enzymes of the urea cycle, the metabolic pathway transforming neurotoxic amonia produced by protein catabolism into inocuous urea in the liver of ureotelic animals. Catalyzes the formation of arginosuccinate from aspartate, citrulline
PDB 2NZ2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00764 Arginosuc_synth 8 403 Arginosuccinate synthase Family
Tissue specificity TISSUE SPECIFICITY: Expressed in adult liver. {ECO:0000269|PubMed:1708740}.
Sequence
Sequence length 412
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1051
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
ASS1-related disorder Pathogenic; Likely pathogenic rs768215008, rs771937610, rs121908639, rs121908643, rs121908646, rs763191684, rs2490621864, rs770944877, rs1588496214 RCV004756500
RCV004755793
RCV003934804
RCV004755716
RCV003914816
RCV004756456
RCV003982273
RCV004756006
RCV003425879
Citrullinemia Likely pathogenic; Pathogenic rs759483921, rs2131882609, rs2118832409, rs2118864015, rs377319610, rs201445618, rs2118839419, rs2118880266, rs2118880626, rs768215008, rs2131874080, rs1453708640, rs2118832404, rs748264993, rs2131886482
View all (104 more)
RCV001387396
RCV001379245
RCV001377539
RCV001379731
RCV001383412
RCV001383413
RCV001383941
RCV001383471
RCV001385370
RCV003226684
RCV002221688
RCV001924015
RCV002033726
RCV001953710
RCV001949257
RCV001957533
RCV001932785
RCV002016489
RCV001991462
RCV002047287
RCV001951564
RCV001946378
RCV001888022
RCV001376639
RCV002228612
RCV001376598
RCV002228610
RCV001850390
RCV003070879
RCV003058237
RCV003062236
RCV001388057
RCV000633525
RCV001376580
RCV002833117
RCV002811830
RCV002844013
RCV002877109
RCV002867825
RCV002953007
RCV003000070
RCV001376548
RCV001376618
RCV001376631
RCV001376637
RCV001376575
RCV001376582
RCV002512847
RCV001376621
RCV001376581
RCV001376556
RCV001851704
RCV002512848
RCV002994081
RCV003044712
RCV003155830
RCV001376558
RCV002521863
RCV002519007
RCV001376552
RCV005627484
RCV003594697
RCV003594754
RCV003594818
RCV003594860
RCV003593586
RCV003594378
RCV003594441
RCV003760715
RCV003761019
RCV003759282
RCV003759446
RCV003759519
RCV001376638
RCV003878027
RCV002523853
RCV003593953
RCV001865271
RCV001376574
RCV003758760
RCV001290024
RCV002230974
RCV002231278
RCV003153687
RCV000552381
RCV001376549
RCV001376617
RCV002233957
RCV002233956
RCV001376559
RCV001376572
RCV002531260
RCV003594016
RCV001855437
RCV002531238
RCV002221574
RCV002532066
RCV002544676
RCV002233293
RCV002233206
RCV001376557
RCV001386473
RCV001869157
RCV000812699
RCV002235282
RCV002549237
RCV001376619
RCV001376579
RCV001860552
RCV002509589
RCV001377855
RCV001048427
RCV001042848
RCV001051566
RCV001216595
RCV001209466
RCV001222048
RCV001217877
RCV002241559
RCV001239626
RCV001238121
RCV003230657
RCV005089535
RCV001376591
RCV001247325
RCV001383414
RCV001290025
Citrullinemia type I Likely pathogenic; Pathogenic rs759483921, rs2118864015, rs2118880266, rs2118880170, rs2118841816, rs768215008, rs777828000, rs2131874080, rs774231051, rs748264993, rs1262020902, rs727503814, rs2490581929, rs2490553265, rs2490553577
View all (112 more)
RCV003462905
RCV001831372
RCV003462992
RCV001580630
RCV001580631
RCV003459808
RCV001780653
RCV003485733
RCV001824208
RCV003471179
RCV005361918
RCV000152808
RCV002306551
RCV002306751
RCV002309651
RCV002309921
RCV002309172
RCV002309502
RCV002307321
RCV002465026
RCV000169436
RCV000169181
RCV000169239
RCV000169103
RCV003459721
RCV000179704
RCV002500568
RCV000190357
RCV000006696
RCV000006698
RCV000006699
RCV000006700
RCV000006701
RCV000006702
RCV000006703
RCV000006704
RCV000006705
RCV000256312
RCV000256322
RCV000006711
RCV003464648
RCV000490502
RCV004572864
RCV000256238
RCV000256264
RCV000256276
RCV000256325
RCV003472933
RCV003474038
RCV003466399
RCV003463553
RCV003463555
RCV003466407
RCV003463563
RCV003474043
RCV003474045
RCV003474048
RCV003466414
RCV003466416
RCV003466417
RCV003463580
RCV003463588
RCV003466427
RCV003464658
RCV003464667
RCV003472922
RCV003494426
RCV004573204
RCV000286574
RCV003985971
RCV004018192
RCV004573741
RCV004573784
RCV004573787
RCV000411464
RCV000411227
RCV000411991
RCV000409826
RCV000410192
RCV000410118
RCV000409266
RCV000411785
RCV000411642
RCV003470378
RCV000672066
RCV000984146
RCV003459204
RCV001783037
RCV000529881
RCV000590599
RCV000633522
RCV000670490
RCV000668864
RCV000671912
RCV000674371
RCV000665063
RCV000668613
RCV000668137
RCV000673813
RCV000666397
RCV000668829
RCV000671967
RCV000670816
RCV000670744
RCV000672915
RCV000670815
RCV000665366
RCV000665132
RCV000669784
RCV000673280
RCV000668096
RCV000674984
RCV000695591
RCV000761224
RCV000761475
RCV000780873
RCV005049704
RCV001004327
RCV001004328
RCV001004329
RCV001004330
RCV001004331
RCV001004332
RCV001004534
RCV001004535
RCV001004536
RCV001004537
RCV001784584
RCV001827325
RCV001192847
RCV003462700
RCV003469382
RCV001246468
RCV001250094
RCV001283858
RCV000078020
RCV000078024
RCV001831814
RCV000078026
RCV000078027
Citrullinemia, mild Pathogenic rs121908646, rs121908647 RCV000006707
RCV000006708
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cardiac arrhythmia Conflicting classifications of pathogenicity rs1372482894 RCV004542186
Cervical cancer Benign rs45599031 RCV005915431
Clear cell carcinoma of kidney Benign; Likely benign rs73541957 RCV005889951
Familial pancreatic carcinoma Benign rs45599031 RCV005915433
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 37762133
Adult onset citrullinemia type 2 Inhibit 12512993
Adult onset citrullinemia type 2 Associate 35726796
Alzheimer Disease Associate 11106581, 32119650
Attention Deficit Disorder with Hyperactivity Stimulate 39173065
Breast Neoplasms Associate 14770441, 35674458
Carcinogenesis Associate 25333458
Carcinoma Endometrioid Inhibit 28358054
Carcinoma Hepatocellular Inhibit 14770441, 28587170, 35864952
Carcinoma Hepatocellular Associate 25164070, 33856599