Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
189
Gene name Gene Name - the full gene name approved by the HGNC.
Alanine--glyoxylate aminotransferase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
AGXT
Synonyms (NCBI Gene) Gene synonyms aliases
AGT, AGT1, AGXT1, PH1, SPAT, SPT, Ser-PyrAT, TLH6
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q37.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is expressed only in the liver and the encoded protein is localized mostly in the peroxisomes, where it is involved in glyoxylate detoxification. Mutations in this gene, some of which alter subcellular targetting, have been associated with type
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs34116584 C>A,G,T Likely-benign, likely-pathogenic, benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs61729604 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs111742810 T>A Pathogenic Splice donor variant
rs111996685 G>A,C Pathogenic Splice donor variant
rs112673831 G>A,C,T Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT459357 hsa-miR-6771-3p PAR-CLIP 23592263
MIRT459356 hsa-miR-6849-3p PAR-CLIP 23592263
MIRT459355 hsa-miR-3190-5p PAR-CLIP 23592263
MIRT459354 hsa-miR-4786-5p PAR-CLIP 23592263
MIRT459353 hsa-miR-3926 PAR-CLIP 23592263
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004760 Function Serine-pyruvate transaminase activity IBA 21873635
GO:0005515 Function Protein binding IPI 15911627, 22529745, 32296183
GO:0005759 Component Mitochondrial matrix IEA
GO:0005777 Component Peroxisome IBA 21873635
GO:0005777 Component Peroxisome IDA 1703535, 3709805, 7813517, 9053548
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604285 341 ENSG00000172482
Protein
UniProt ID P21549
Protein name Alanine--glyoxylate aminotransferase (AGT) (EC 2.6.1.44) (Serine--pyruvate aminotransferase) (SPT) (EC 2.6.1.51)
Protein function Peroxisomal aminotransferase that catalyzes the transamination of glyoxylate to glycine and contributes to the glyoxylate detoxification (PubMed:10960483, PubMed:12777626, PubMed:23229545, PubMed:24055001, PubMed:26149463). Also catalyzes the tr
PDB 1H0C , 1J04 , 2YOB , 3R9A , 4CBR , 4CBS , 4I8A , 4KXK , 4KYO , 5F9S , 5HHY , 5LUC , 5OFY , 5OG0 , 6RV0 , 6RV1 , 7NS7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00266 Aminotran_5 23 376 Aminotransferase class-V Domain
Tissue specificity TISSUE SPECIFICITY: Liver.
Sequence
Sequence length 392
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Unknown
Disease term Disease name Evidence References Source
Oligodendroglioma Oligodendroglioma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Agnosia Stimulate 1742479
Atherosclerosis Associate 19592499
Blast Crisis Associate 265737, 2724649
Cakut Associate 27151922
Carcinoma Hepatocellular Associate 25975536, 28430663, 35625596
Carcinoma Non Small Cell Lung Associate 33408043
Carcinoma Renal Cell Associate 32144299, 38297313
Cerebral Infarction Associate 26352407
Cholangiocarcinoma Associate 36158120
Chromosome Aberrations Stimulate 1062222, 1976121