Gene Gene information from NCBI Gene database.
Entrez ID 215
Gene name ATP binding cassette subfamily D member 1
Gene symbol ABCD1
Synonyms (NCBI Gene)
ABC42ALDALDPAMN
Chromosome X
Chromosome location Xq28
Summary The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, M
SNPs SNP information provided by dbSNP.
86
SNP ID Visualize variation Clinical significance Consequence
rs4010613 C>A,T Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs11146842 G>A Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs128624214 C>G Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs128624215 C>G,T Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs128624219 G>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
106
miRTarBase ID miRNA Experiments Reference
MIRT029416 hsa-miR-26b-5p Microarray 19088304
MIRT050424 hsa-miR-23a-3p CLASH 23622248
MIRT039787 hsa-miR-615-3p CLASH 23622248
MIRT053394 hsa-miR-96-5p Microarray 23807165
MIRT758715 hsa-miR-1202 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
115
GO ID Ontology Definition Evidence Reference
GO:0000038 Process Very long-chain fatty acid metabolic process IDA 29397936
GO:0000038 Process Very long-chain fatty acid metabolic process IEA
GO:0000166 Function Nucleotide binding IEA
GO:0002082 Process Regulation of oxidative phosphorylation IEA
GO:0002082 Process Regulation of oxidative phosphorylation ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300371 61 ENSG00000101986
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P33897
Protein name ATP-binding cassette sub-family D member 1 (EC 3.1.2.-) (EC 7.6.2.-) (Adrenoleukodystrophy protein) (ALDP)
Protein function ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)-CoA from the cytosol to the peroxisome lumen (PubMed:11248239, PubMed:15682271, PubMed:16946495, PubMed:18757502,
PDB 7RR9 , 7RRA , 7SHM , 7SHN , 7VR1 , 7VWC , 7VX8 , 7VZB , 7X07 , 7X0T , 7X0Z , 7X1W , 7XEC , 7YRQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06472 ABC_membrane_2 78 352 ABC transporter transmembrane region 2 Family
PF00005 ABC_tran 490 633 ABC transporter Domain
Sequence
MPVLSRPRPWRGNTLKRTAVLLALAAYGAHKVYPLVRQCLAPARGLQAPAGEPTQEASGV
AAAKAGMNRVFLQRLLWLLRLLFPRVLCRETGLLALHSAALVSRTFLSVYVARLDGRLAR
CIVRKDPRAFGWQLLQWLLIALPATFVNSAIRYLEGQLALSFRSRLVAHAYRLYFSQQTY
YRVSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGT
AWPSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHE
VELALLQRSYQDLASQINLILLERLWYVMLEQFLMKYVWSASGLLMVAVPII
TATGYSES
DAEAVKKAALEKKEEELVSERTEAFTIARNLLTAAADAIERIMSSYKEVTELAGYTARVH
EMFQVFEDVQRCHFKRPRELEDAQAGSGTIGRSGVRVEGPLKIRGQVVDVEQGIICENIP
IVTPSGEVVVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPPQRMF
YIPQRPYMSVGSLRDQVIYPDSVEDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCD
WKDVLSGGEKQRIGMARMFYHRPKYALLDECTS
AVSIDVEGKIFQAAKDAGIALLSITHR
PSLWKYHTHLLQFDGEGGWKFEKLDSAARLSLTEEKQRLEQQLAGIPKMQRRLQELCQIL
GEAVAPAHVPAPSPQGPGGLQGAST
Sequence length 745
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1530
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
ABCD1-related disorder Pathogenic; Likely pathogenic rs1057517954, rs2091705296, rs782603062, rs1557052294, rs713993050, rs201568579, rs150346282, rs128624221, rs387906494, rs886044777, rs2522264924, rs2522296936, rs2522276205, rs868911300, rs2522267128
View all (9 more)
RCV003402235
RCV004753460
RCV003892948
RCV004731257
RCV005867934
RCV004752757
RCV004730887
RCV003415686
RCV004752700
RCV003391027
RCV003412510
RCV003397575
RCV003392991
RCV003402836
RCV003983608
RCV003969153
RCV004730940
RCV003392323
RCV003407363
RCV003392549
RCV003392550
RCV004753011
RCV004752737
RCV004752738
RCV004731120
Abnormality of the nervous system Likely pathogenic rs2148395370 RCV001814562
Adrenoleukodystrophy Pathogenic; Likely pathogenic rs2091708688, rs2091749844, rs1603231784, rs2148389975, rs2148391889, rs2148396070, rs1603231653, rs2148389462, rs2148389592, rs2148389670, rs1204814114, rs2148389834, rs2148391974, rs782007706, rs2148397523
View all (310 more)
RCV001342918
RCV001340427
RCV001368455
RCV001379121
RCV001379281
RCV001377747
RCV001389072
RCV001390636
RCV001384967
RCV001385573
RCV001389361
RCV001380623
RCV001380273
RCV001385753
RCV001386788
RCV001385383
RCV001390826
RCV001386772
RCV001389342
RCV001382141
RCV001380654
RCV001526392
RCV001526996
RCV001553605
RCV003512119
RCV002570805
RCV002221634
RCV001724778
RCV005095121
RCV002541171
RCV003136152
RCV001885173
RCV003512134
RCV001885174
RCV001823692
RCV002046321
RCV002040642
RCV002017853
RCV002017882
RCV001878403
RCV001897900
RCV001950801
RCV001970107
RCV001950806
RCV001946695
RCV001982473
RCV001902392
RCV001972629
RCV001958819
RCV001874529
RCV002007465
RCV002009827
RCV001962893
RCV001951233
RCV002017025
RCV002028139
RCV001908964
RCV002031941
RCV001993926
RCV001892058
RCV002040878
RCV001909983
RCV001918693
RCV001920320
RCV002237198
RCV002248958
RCV002249220
RCV002251033
RCV002282796
RCV002290421
RCV000149556
RCV001203306
RCV000152721
RCV002296614
RCV002306581
RCV002306822
RCV002309619
RCV002310219
RCV002310523
RCV002308396
RCV004572278
RCV003100714
RCV003512178
RCV006262478
RCV002468727
RCV002468888
RCV002470648
RCV003066399
RCV003066400
RCV003066401
RCV003066402
RCV003066403
RCV003066404
RCV003066405
RCV003050673
RCV003050674
RCV003078940
RCV003079251
RCV000173051
RCV002516594
RCV000763198
RCV002569629
RCV002731061
RCV002741931
RCV002770187
RCV002834192
RCV002839526
RCV002837788
RCV002833472
RCV002880285
RCV002866777
RCV002875576
RCV002876439
RCV002876482
RCV002863587
RCV002886463
RCV002948127
RCV003005969
RCV000202647
RCV003043496
RCV003057893
RCV003048221
RCV003040508
RCV003123359
RCV003512192
RCV003150900
RCV003152947
RCV003227538
RCV000012044
RCV000012045
RCV000012046
RCV000012048
RCV000012049
RCV000012050
RCV000012051
RCV000012052
RCV000012053
RCV000012054
RCV000012055
RCV000012056
RCV000012057
RCV000012058
RCV000012059
RCV000012060
RCV000012061
RCV000180094
RCV000012064
RCV000012065
RCV000012066
RCV000012067
RCV000012068
RCV000012069
RCV000984141
RCV003230247
RCV003230788
RCV003236250
RCV003314491
RCV003315149
RCV003322678
RCV003323269
RCV003397179
RCV003464745
RCV003474058
RCV003474126
RCV003466469
RCV004545908
RCV005100324
RCV003779260
RCV003494087
RCV003512234
RCV003512877
RCV003512437
RCV003513195
RCV003513256
RCV003512999
RCV003513232
RCV003513336
RCV003513554
RCV003513742
RCV003513705
RCV003513706
RCV003513708
RCV003513709
RCV003513710
RCV003513711
RCV003513713
RCV003513714
RCV003513715
RCV003513719
RCV003513720
RCV003513721
RCV003513722
RCV003513723
RCV003513724
RCV003511600
RCV003511643
RCV003513752
RCV003511818
RCV003511842
RCV003511854
RCV003512602
RCV003512634
RCV003512800
RCV003625136
RCV003625282
RCV003625394
RCV003625417
RCV003625421
RCV003625488
RCV003625477
RCV003625603
RCV003625604
RCV003625652
RCV003625949
RCV003624099
RCV003881697
RCV003992863
RCV003991911
RCV004574512
RCV004574537
RCV001290674
RCV000699535
RCV000853230
RCV000633486
RCV000633477
RCV001800721
RCV000029284
RCV000029289
RCV000029290
RCV001377327
RCV000544041
RCV000547607
RCV000538578
RCV000552581
RCV000550301
RCV000530996
RCV000525103
RCV000548944
RCV000529139
RCV000536329
RCV000551222
RCV000532174
RCV000541276
RCV000578153
RCV000625957
RCV001243822
RCV001800831
RCV000633483
RCV000633481
RCV000633485
RCV000633478
RCV000633480
RCV000633482
RCV000633489
RCV000633492
RCV000633491
RCV000693896
RCV000700171
RCV000691168
RCV000699538
RCV000686459
RCV000699233
RCV000704173
RCV000710054
RCV000710055
RCV000710056
RCV000722143
RCV004768619
RCV000758243
RCV000761212
RCV000761213
RCV000761214
RCV000761215
RCV000761216
RCV000761217
RCV000761218
RCV000761219
RCV000787038
RCV000812852
RCV000812366
RCV000824204
RCV000813592
RCV000795935
RCV000807408
RCV000824100
RCV000807056
RCV000799162
RCV000793335
RCV000813291
RCV000796458
RCV000824353
RCV000816853
RCV000850151
RCV000850177
RCV000853228
RCV000853225
RCV000855404
RCV000856679
RCV000990973
RCV000990975
RCV000990976
RCV000990977
RCV000990978
RCV000990981
RCV000990982
RCV001800915
RCV001862753
RCV001055844
RCV001069371
RCV001070251
RCV001043120
RCV001041848
RCV001036486
RCV001041034
RCV001035149
RCV001055117
RCV001038533
RCV001060280
RCV001036673
RCV001041737
RCV001045481
RCV001089938
RCV001090088
RCV001093621
RCV001261538
RCV003235483
RCV001223136
RCV001219529
RCV001220804
RCV001225015
RCV001218447
RCV001223848
RCV001214145
RCV001213319
RCV001206383
RCV001204546
RCV001210435
RCV001218118
RCV001235837
RCV001237757
RCV001237662
RCV001235149
RCV001230399
RCV001230853
RCV001240692
RCV001253262
RCV001253401
RCV001253465
RCV001253021
RCV001253241
RCV001263478
RCV003512112
RCV001063464
RCV000077955
RCV000077958
RCV000808514
RCV002513814
RCV000077961
RCV002513815
RCV002515752
RCV001800384
RCV001290134
RCV001290372
RCV001306698
Ehlers-Danlos syndrome, kyphoscoliotic type 1 Likely pathogenic; Pathogenic rs1557054873 RCV004541648
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs181218840 RCV005911527
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity rs78993751 RCV005893620
EBV-positive nodal T- and NK-cell lymphoma Likely benign rs199997983 RCV004559341
Familial cancer of breast Benign rs181218840 RCV005911526
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Addison Disease Associate 21264817, 32207279, 36175155, 36983033
Adrenal Gland Diseases Associate 34445349
Adrenal Insufficiency Associate 20228476, 31777199, 32207279
Adrenoleukodystrophy Associate 10068511, 10068516, 11992258, 12065405, 17498713, 17602313, 17609205, 19787628, 20166112, 20228476, 20661612, 21264817, 21966424, 22045812, 22253809
View all (97 more)
Bipolar Disorder Associate 40142297
Brain Diseases Associate 22687851, 24719134
Carcinogenesis Associate 19787628
Carcinoma Renal Cell Inhibit 19787628
Carcinoma Renal Cell Associate 38297313
Cerebral Arterial Diseases Associate 23036268, 29136088