Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8647
Gene name Gene Name - the full gene name approved by the HGNC.
ATP binding cassette subfamily B member 11
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ABCB11
Synonyms (NCBI Gene) Gene synonyms aliases
ABC16, BRIC2, BSEP, PFIC-2, PFIC2, PGY4, SPGP
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BRIC2, PFIC2
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q31.1
Summary Summary of gene provided in NCBI Entrez Gene.
The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2287617 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, genic upstream transcript variant
rs11568360 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Genic upstream transcript variant, synonymous variant, coding sequence variant
rs11568361 G>A,C Uncertain-significance, pathogenic, likely-benign Missense variant, stop gained, genic upstream transcript variant, coding sequence variant
rs11568362 G>A Conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, synonymous variant, coding sequence variant
rs11568370 C>G Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006901 hsa-miR-33a-5p Luciferase reporter assay, qRT-PCR 22767443
MIRT661013 hsa-miR-1266-3p HITS-CLIP 23824327
MIRT661012 hsa-miR-138-2-3p HITS-CLIP 23824327
MIRT661011 hsa-miR-3074-5p HITS-CLIP 23824327
MIRT661010 hsa-miR-7152-5p HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
NR1H4 Unknown 11387316
NR5A2 Unknown 18270374
RXRA Unknown 11387316
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005215 Function Transporter activity TAS 9806540
GO:0005515 Function Protein binding IPI 22262466, 32296183
GO:0005524 Function ATP binding IEA
GO:0005768 Component Endosome ISS
GO:0005886 Component Plasma membrane IDA 22262466
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603201 42 ENSG00000073734
Protein
UniProt ID O95342
Protein name Bile salt export pump (EC 7.6.2.-) (ATP-binding cassette sub-family B member 11)
Protein function Catalyzes the transport of the major hydrophobic bile salts, such as taurine and glycine-conjugated cholic acid across the canalicular membrane of hepatocytes in an ATP-dependent manner, therefore participates in hepatic bile acid homeostasis an
PDB 6LR0 , 7DV5 , 7E1A , 8PM6 , 8PMD , 8PMJ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00664 ABC_membrane 62 371 ABC transporter transmembrane region Family
PF00005 ABC_tran 438 587 ABC transporter Domain
PF00664 ABC_membrane 755 1029 ABC transporter transmembrane region Family
PF00005 ABC_tran 1096 1247 ABC transporter Domain
Tissue specificity TISSUE SPECIFICITY: Expressed predominantly, if not exclusively in the liver, where it was further localized to the canalicular microvilli and to subcanalicular vesicles of the hepatocytes by in situ.
Sequence
MSDSVILRSIKKFGEENDGFESDKSYNNDKKSRLQDEKKGDGVRVGFFQLFRFSSSTDIW
LMFVGSLCAFLHGIAQPGVLLIFGTMTDVFIDYDVELQELQIPGKACVNNTIVWTNSSLN
QNMTNGTRCGLLNIESEMIKFASYYAGIAVAVLITGYIQICFWVIAAARQIQKMRKFYFR
RIMRMEIGWFDCNSVGELNTRFSDDINKINDAIADQMALFIQRMTSTICGFLLGFFRGWK
LTLVIISVSPLIGIGAATIGLSVSKFTDYELKAYAKAGVVADEVISSMRTVAAFGGEKRE
VERYEKNLVFAQRWGIRKGIVMGFFTGFVWCLIFLCYALAFWYGSTLVLDEGEYTPGTLV
QIFLSVIVGAL
NLGNASPCLEAFATGRAAATSIFETIDRKPIIDCMSEDGYKLDRIKGEI
EFHNVTFHYPSRPEVKILNDLNMVIKPGEMTALVGPSGAGKSTALQLIQRFYDPCEGMVT
VDGHDIRSLNIQWLRDQIGIVEQEPVLFSTTIAENIRYGREDATMEDIVQAAKEANAYNF
IMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLDMATS
ALDNESEAMVQEV
LSKIQHGHTIISVAHRLSTVRAADTIIGFEHGTAVERGTHEELLERKGVYFTLVTLQSQG
NQALNEEDIKDATEDDMLARTFSRGSYQDSLRASIRQRSKSQLSYLVHEPPLAVVDHKST
YEEDRKDKDIPVQEEVEPAPVRRILKFSAPEWPYMLVGSVGAAVNGTVTPLYAFLFSQIL
GTFSIPDKEEQRSQINGVCLLFVAMGCVSLFTQFLQGYAFAKSGELLTKRLRKFGFRAML
GQDIAWFDDLRNSPGALTTRLATDASQVQGAAGSQIGMIVNSFTNVTVAMIIAFSFSWKL
SLVILCFFPFLALSGATQTRMLTGFASRDKQALEMVGQITNEALSNIRTVAGIGKERRFI
EALETELEKPFKTAIQKANIYGFCFAFAQCIMFIANSASYRYGGYLISNEGLHFSYVFRV
ISAVVLSAT
ALGRAFSYTPSYAKAKISAARFFQLLDRQPPISVYNTAGEKWDNFQGKIDF
VDCKFTYPSRPDSQVLNGLSVSISPGQTLAFVGSSGCGKSTSIQLLERFYDPDQGKVMID
GHDSKKVNVQFLRSNIGIVSQEPVLFACSIMDNIKYGDNTKEIPMERVIAAAKQAQLHDF
VMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEATS
ALDTESEKTVQVA
LDKAREGRTCIVIAHRLSTIQNADIIAVMAQGVVIEKGTHEELMAQKGAYYKLVTTGSPI
S
Sequence length 1321
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Unknown
Disease term Disease name Evidence References Source
Benign Intrahepatic Cholestasis benign recurrent intrahepatic cholestasis type 2 GenCC
Metabolic Syndrome Metabolic Syndrome GWAS
Intrahepatic Cholestasis Of Pregnancy Intrahepatic Cholestasis Of Pregnancy GWAS
Gout Gout GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Inhibit 35995956
Acute Disease Associate 35894240
Alcoholism Associate 22522591
Behcet Syndrome Associate 28150711
Biliary Atresia Associate 34964797, 35029214
Carcinoma Ductal Associate 32203204
Carcinoma Hepatocellular Associate 24462510, 28425419, 29138286, 36995996
Chemical and Drug Induced Liver Injury Associate 12052824, 24154606, 24335466, 32634627, 37949847
Cholangiocarcinoma Associate 18395098, 21691113
Cholangitis Sclerosing Associate 31886153