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TGFB1 (transforming growth factor beta 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7040
Gene nameGene Name - the full gene name approved by the HGNC.
Transforming growth factor beta 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
TGFB1
SynonymsGene synonyms aliases
CED, DPD1, IBDIMDE, LAP, TGF-beta1, TGFB, TGFbeta
ChromosomeChromosome number
19
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.2
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1800470 G>A,C Risk-factor, benign Coding sequence variant, missense variant
rs72480429 G>A,C Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs104894719 A>G Pathogenic Coding sequence variant, missense variant
rs104894720 C>T Pathogenic Coding sequence variant, missense variant
rs104894721 G>A Pathogenic Coding sequence variant, missense variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005918 hsa-miR-24-3p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 20945401
MIRT006059 hsa-miR-29b-3p ELISA, GFP reporter assay, qRT-PCR 21273536
MIRT006114 hsa-miR-144-3p Luciferase reporter assay, qRT-PCR 21991303
MIRT006059 hsa-miR-29b-3p ELISA, GFP reporter assay, qRT-PCR 21273536
MIRT006114 hsa-miR-144-3p Luciferase reporter assay, qRT-PCR 21991303
Transcription factors
Transcription factor Regulation Reference
ASH1L Unknown 22488473
FOSB Unknown 10843986
FOSL2 Unknown 10843986
JUND Unknown 10843986
NFKB1 Unknown 16365456
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000165 Process MAPK cascade IMP 21147091
GO:0001570 Process Vasculogenesis ISS
GO:0001837 Process Epithelial to mesenchymal transition IDA 25893292, 29529050
GO:0001843 Process Neural tube closure ISS
GO:0001933 Process Negative regulation of protein phosphorylation IDA 8053900
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P01137
Protein name Transforming growth factor beta-1 proprotein [Cleaved into: Latency-associated peptide (LAP); Transforming growth factor beta-1 (TGF-beta-1)]
Protein function Transforming growth factor beta-1 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-1 (TGF-beta-1) chains, which constitute the regulatory and active subunit of TGF-beta-1, respectively. {ECO:00002
PDB 1KLA , 1KLC , 1KLD , 3KFD , 4KV5 , 5FFO , 5VQP , 6OM2 , 6P7J , 7Y1R , 7Y1T , 8UDZ , 8VSC , 8VSD , 9FDY , 9FKP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00688 TGFb_propeptide
29 261
TGF-beta propeptide
Family
PF00019 TGF_beta
292 389
Transforming growth factor beta like domain
Domain
Sequence
Sequence length 390
Interactions View interactions

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