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TCF7L2 (transcription factor 7 like 2)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6934
Gene nameGene Name - the full gene name approved by the HGNC.
Transcription factor 7 like 2
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
TCF7L2
SynonymsGene synonyms aliases
TCF-4, TCF4
ChromosomeChromosome number
10
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q25.2-q25.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a high mobility group (HMG) box-containing transcription factor that plays a key role in the Wnt signaling pathway. The protein has been implicated in blood glucose homeostasis. Genetic variants of this gene are associated with increased
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs7903146 C>G,T Drug-response, risk-factor Intron variant, genic upstream transcript variant
rs11196205 G>A,C,T Risk-factor Intron variant, genic upstream transcript variant
rs12255372 G>A,T Risk-factor Intron variant, genic upstream transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT043583 hsa-miR-148b-3p CLASH 23622248
MIRT043052 hsa-miR-324-5p CLASH 23622248
MIRT612391 hsa-miR-32-3p HITS-CLIP 23824327
MIRT612390 hsa-miR-155-3p HITS-CLIP 23824327
MIRT612389 hsa-miR-3685 HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
AR Unknown 12799378
FOXA2 Unknown 22951069
GATA3 Unknown 22951069
HNF4A Unknown 22951069
TP53 Repression 14990988
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 12799378
GO:0000785 Component Chromatin IDA 19443654
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding IDA 20128911
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA 19443654
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9NQB0
Protein name Transcription factor 7-like 2 (HMG box transcription factor 4) (T-cell-specific transcription factor 4) (T-cell factor 4) (TCF-4) (hTCF-4)
Protein function Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as a repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promote
PDB 1JDH , 1JPW , 2GL7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08347 CTNNB1_binding
1 259
N-terminal CTNNB1 binding
Family
PF00505 HMG_box
350 418
HMG (high mobility group) box
Domain
Sequence
MPQLNGGGGDDLGANDELISFKDEGEQEEKSSENSSAERDLADVKSSLVNESETNQNSSS
DSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPGYPFIMIPDLTSPYLPNGS
LSPTARTLHFQSGSTHYSAYKTIEHQIAVQYLQMKWPLLDVQAGSLQSRQALKDARSPSP
AHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDIS
PYYPLSPGTVGQIPHPLGW
LVPQQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHMVPP
HHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLY
MKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS
AR
DNYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITDLSAPKKCRARFGLDQQNNWCGPC
RRKKKCVRYIQGEGSCLSPPSSDGSLLDSPPPSPNLLGSPPRDAKSQTEQTQPLSLSLKP
DPLAHLSMMPPPPALLLAEATHKASALCPNGALDLPPAALQPAAPSSSIAQPSTSSLHSH
SSLAGTQPQPLSLVTKSLE
Sequence length 619
Interactions View interactions

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