GediPNet logo

SNAI1 (snail family transcriptional repressor 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6615
Gene nameGene Name - the full gene name approved by the HGNC.
Snail family transcriptional repressor 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
SNAI1
SynonymsGene synonyms aliases
SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1
ChromosomeChromosome number
20
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.13
SummarySummary of gene provided in NCBI Entrez Gene.
The Drosophila embryonic protein snail is a zinc finger transcriptional repressor which downregulates the expression of ectodermal genes within the mesoderm. The nuclear protein encoded by this gene is structurally similar to the Drosophila snail protein,
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004651 hsa-miR-204-5p Luciferase reporter assay 20056717
MIRT006760 hsa-miR-30a-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006760 hsa-miR-30a-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006761 hsa-miR-30b-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006761 hsa-miR-30b-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
Transcription factors
Transcription factor Regulation Reference
CREB1 Repression 15955695
ESRRA Repression 15955695
HMGA2 Unknown 22241470
HOXA10 Repression 16424022
ID2 Activation 22551584
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 11912130
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 15314165
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 11912130
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID O95863
Protein name Zinc finger protein SNAI1 (Protein snail homolog 1) (Protein sna)
Protein function Involved in induction of the epithelial to mesenchymal transition (EMT), formation and maintenance of embryonic mesoderm, growth arrest, survival and cell migration (PubMed:10655587, PubMed:15647282, PubMed:20389281, PubMed:20562920, PubMed:2195
PDB 2Y48 , 3W5K , 3ZMT , 4QLI , 8BOX , 8F59 , 8FDV , 8FJ7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13912 zf-C2H2_6
153 177
Domain
PF00096 zf-C2H2
180 202
Zinc finger, C2H2 type
Domain
PF00096 zf-C2H2
208 230
Zinc finger, C2H2 type
Domain
Sequence
MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
VCGTCGKAFSRPWLLQGHVRTH
TGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
CARTFSRMSLLHKHQESGCSGCPR
Sequence length 264
Interactions View interactions

| © 2021, Biomedical Informatics Centre, NIRRH |
ICMR-National Institute for Research in Reproductive Health, Jehangir Merwanji Street, Parel, Mumbai-400012
Tel: +91-22-24192104, Fax No: +91-22-24139412