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RELA (RELA proto-oncogene, NF-kB subunit)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5970
Gene nameGene Name - the full gene name approved by the HGNC.
RELA proto-oncogene, NF-kB subunit
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
RELA
SynonymsGene synonyms aliases
AIF3BL3, CMCU, NFKB3, p65
ChromosomeChromosome number
11
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q13.1
SummarySummary of gene provided in NCBI Entrez Gene.
NF-kappa-B is a ubiquitous transcription factor involved in several biological processes. It is held in the cytoplasm in an inactive state by specific inhibitors. Upon degradation of the inhibitor, NF-kappa-B moves to the nucleus and activates transcripti
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1565191003 C>T Pathogenic Splice donor variant
rs1590931704 T>G Likely-pathogenic Splice acceptor variant, intron variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002616 hsa-miR-124-3p Luciferase reporter assay, Microarray 15685193
MIRT002531 hsa-miR-373-3p Microarray 15685193
MIRT002531 hsa-miR-373-3p Microarray;Other 15685193
MIRT002616 hsa-miR-124-3p Microarray;Other 15685193
MIRT025722 hsa-miR-7-5p Sequencing 20371350
Transcription factors
Transcription factor Regulation Reference
APEX1 Activation 17045925
AR Repression 18386814
ATF2 Activation 21350211
BCL3 Unknown 7896265
EP300 Unknown 21146504
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 17350185
GO:0000785 Component Chromatin IDA 21343296, 26268439
GO:0000785 Component Chromatin IGI 23729669
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding IDA 17350185
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q04206
Protein name Transcription factor p65 (Nuclear factor NF-kappa-B p65 subunit) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 3)
Protein function NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammati
PDB 1NFI , 2LSP , 2O61 , 3GUT , 3QXY , 3RC0 , 4KV1 , 4KV4 , 5U4K , 5URN , 6NV2 , 6QHL , 6QHM , 6YOW , 6YOX , 6YOY , 6YP2 , 6YP3 , 6YP8 , 6YPL , 6YPY , 6YQ2 , 7BI3 , 7BIQ , 7BIW , 7BIY , 7BJB , 7BJF , 7BJL , 7BJW , 7BKH , 7LET , 7LEU , 7LF4 , 7NJ9 , 7NJB , 7NK3 , 7NK5 , 7NLA , 7NLE , 7NM1 , 7NM3 , 7NM9 , 7NMH , 7NQP , 7NR7 , 7NSV , 7NV4 , 7NVI , 7NWS , 7NXS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00554 RHD_DNA_bind
21 186
Rel homology DNA-binding domain
Domain
PF16179 RHD_dimer
195 292
Rel homology dimerisation domain
Domain
Sequence
MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
VKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLS
HPIFDN
RAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFS
QADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDT
DDRHRIEE
KRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQPYPFTSSLSTINY
DEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQA
VAPPAPKPTQAGEGTLSEALLQLQFDDEDLGALLGNSTDPAVFTDLASVDNSEFQQLLNQ
GIPVAPHTTEPMLMEYPEAITRLVTGAQRPPDPAPAPLGAPGLPNGLLSGDEDFSSIADM
DFSALLSQISS
Sequence length 551
Interactions View interactions

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