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IDH1 (isocitrate dehydrogenase (NADP(+)) 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
3417
Gene nameGene Name - the full gene name approved by the HGNC.
Isocitrate dehydrogenase (NADP(+)) 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
IDH1
SynonymsGene synonyms aliases
HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC, PICD
ChromosomeChromosome number
2
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q34
SummarySummary of gene provided in NCBI Entrez Gene.
Isocitrate dehydrogenases catalyze the oxidative decarboxylation of isocitrate to 2-oxoglutarate. These enzymes belong to two distinct subclasses, one of which utilizes NAD(+) as the electron acceptor and the other NADP(+). Five isocitrate dehydrogenases
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121913499 G>A,C,T Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs121913500 C>A,G,T Likely-pathogenic, not-provided, pathogenic Coding sequence variant, missense variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005125 hsa-miR-30a-5p pSILAC 18668040
MIRT017645 hsa-miR-335-5p Microarray 18185580
MIRT005125 hsa-miR-30a-5p Proteomics;Other 18668040
MIRT036500 hsa-miR-1226-3p CLASH 23622248
MIRT054822 hsa-miR-30c-5p qRT-PCR, Western blot 24623846
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000287 Function Magnesium ion binding IDA 19935646
GO:0004450 Function Isocitrate dehydrogenase (NADP+) activity IBA 21873635
GO:0004450 Function Isocitrate dehydrogenase (NADP+) activity IDA 10521434, 19935646, 20171178
GO:0005515 Function Protein binding IPI 32814053
GO:0005576 Component Extracellular region TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID O75874
Protein name Isocitrate dehydrogenase [NADP] cytoplasmic (IDH) (IDH1) (EC 1.1.1.42) (Cytosolic NADP-isocitrate dehydrogenase) (IDPc) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase)
Protein function Catalyzes the NADP(+)-dependent oxidative decarboxylation of isocitrate (D-threo-isocitrate) to 2-ketoglutarate (2-oxoglutarate), which is required by other enzymes such as the phytanoyl-CoA dioxygenase (PubMed:10521434, PubMed:19935646). Plays
PDB 1T09 , 1T0L , 3INM , 3MAP , 3MAR , 3MAS , 4I3K , 4I3L , 4KZO , 4L03 , 4L04 , 4L06 , 4UMX , 4UMY , 4XRX , 4XS3 , 5DE1 , 5GIR , 5K10 , 5K11 , 5L57 , 5L58 , 5LGE , 5SUN , 5SVF , 5TQH , 5YFM , 5YFN , 6ADG , 6B0Z , 6BKX , 6BKY , 6BKZ , 6BL0 , 6BL1 , 6BL2 , 6IO0 , 6O2Y , 6O2Z , 6PAY , 6Q6F , 6U4J , 6VEI , 6VG0 , 7PJM , 7PJN , 8BAY , 8HB9 , 8T7D , 8T7N , 8T7O
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00180 Iso_dh
9 401
Isocitrate/isopropylmalate dehydrogenase
Domain
Sequence
Sequence length 414
Interactions View interactions

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