GNAS (GNAS complex locus)
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Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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2778 |
Gene nameGene Name - the full gene name approved by the HGNC.
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GNAS complex locus |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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GNAS |
SynonymsGene synonyms aliases
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AHO, AIMAH1, C20orf45, GNAS1, GPSA, GSA, GSP, NESP, PITA3, POH, SCG6, SgVI |
ChromosomeChromosome number
|
20 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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20q13.32 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This locus has a highly complex imprinted expression pattern. It gives rise to maternally, paternally, and biallelically expressed transcripts that are derived from four alternative promoters and 5` exons. Some transcripts contain a differentially methyla |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs11554273 |
C>A,G,T |
Likely-pathogenic, pathogenic |
Missense variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant, 3 prime UTR variant |
rs111541229 |
G>C,T |
Likely-pathogenic |
Splice donor variant, intron variant |
rs113029858 |
G>C,T |
Pathogenic |
Genic downstream transcript variant, splice donor variant |
rs121913494 |
A>G,T |
Likely-pathogenic, pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs121913495 |
G>A,T |
Likely-pathogenic, pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, non coding transcript variant, missense variant |
rs137854530 |
A>G,T |
Likely-pathogenic, pathogenic |
Upstream transcript variant, 5 prime UTR variant, intron variant, genic upstream transcript variant, non coding transcript variant, missense variant, initiator codon variant |
rs137854531 |
T>C |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, non coding transcript variant, missense variant |
rs137854532 |
C>T |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, non coding transcript variant, missense variant |
rs137854533 |
G>C,T |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs137854534 |
C>G |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs137854535 |
C>T |
Uncertain-significance, pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs137854536 |
CG>GC |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs137854537 |
G>A,T |
Uncertain-significance, pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, non coding transcript variant, missense variant |
rs137854538 |
G>A |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant, missense variant |
rs137854539 |
C>T |
Likely-pathogenic, pathogenic |
Coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, non coding transcript variant, missense variant |
rs201332059 |
T>G |
Not-provided, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, missense variant, genic upstream transcript variant, intron variant |
rs397514456 |
G>A,T |
Pathogenic |
Stop gained, missense variant, genic downstream transcript variant, coding sequence variant, 3 prime UTR variant, non coding transcript variant |
rs397514457 |
T>G |
Pathogenic |
Missense variant, genic downstream transcript variant, coding sequence variant, 3 prime UTR variant, non coding transcript variant |
rs587776829 |
GACT>- |
Pathogenic |
3 prime UTR variant, coding sequence variant, frameshift variant, genic downstream transcript variant, non coding transcript variant |
rs774711025 |
CTG>-,CTGCTG |
Pathogenic |
Upstream transcript variant, inframe deletion, intron variant, non coding transcript variant, genic upstream transcript variant, 5 prime UTR variant, coding sequence variant, inframe insertion |
rs797044895 |
A>G |
Likely-pathogenic |
Non coding transcript variant, 3 prime UTR variant, 5 prime UTR variant, missense variant, coding sequence variant |
rs797045046 |
C>G,T |
Pathogenic |
Upstream transcript variant, stop gained, intron variant, non coding transcript variant, genic upstream transcript variant, 5 prime UTR variant, missense variant, coding sequence variant |
rs797045203 |
C>A |
Pathogenic |
Non coding transcript variant, genic downstream transcript variant, 3 prime UTR variant, missense variant, coding sequence variant, downstream transcript variant |
rs863224876 |
C>T |
Likely-pathogenic |
Stop gained, non coding transcript variant, genic downstream transcript variant, 3 prime UTR variant, coding sequence variant |
rs886039383 |
A>G |
Pathogenic |
Genic downstream transcript variant, splice acceptor variant |
rs886039677 |
C>T |
Pathogenic |
Stop gained, non coding transcript variant, genic downstream transcript variant, 3 prime UTR variant, coding sequence variant, downstream transcript variant |
rs1057518224 |
T>- |
Pathogenic |
Coding sequence variant, non coding transcript variant, 3 prime UTR variant, frameshift variant, genic downstream transcript variant |
rs1057518907 |
C>G,T |
Pathogenic |
Intron variant, coding sequence variant, upstream transcript variant, non coding transcript variant, 5 prime UTR variant, genic upstream transcript variant, stop gained, missense variant |
rs1057520715 |
G>A |
Pathogenic |
Intron variant, coding sequence variant, upstream transcript variant, non coding transcript variant, 5 prime UTR variant, genic upstream transcript variant, missense variant |
rs1064794045 |
G>C |
Pathogenic |
Intron variant, coding sequence variant, upstream transcript variant, non coding transcript variant, 5 prime UTR variant, genic upstream transcript variant, missense variant |
rs1064795798 |
G>A |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, 3 prime UTR variant, missense variant, genic downstream transcript variant |
rs1085307719 |
CGCCAT>- |
Pathogenic |
Intron variant, inframe deletion, upstream transcript variant, non coding transcript variant, 5 prime UTR variant, genic upstream transcript variant, initiator codon variant |
rs1131691999 |
C>T |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, 3 prime UTR variant, missense variant, genic downstream transcript variant |
rs1135401777 |
G>A |
Likely-pathogenic |
Intron variant, coding sequence variant, synonymous variant, genic upstream transcript variant, missense variant |
rs1272546759 |
C>G,T |
Likely-pathogenic |
Missense variant, downstream transcript variant, genic downstream transcript variant, non coding transcript variant, synonymous variant, coding sequence variant, 3 prime UTR variant |
rs1555883949 |
T>C |
Pathogenic |
Genic upstream transcript variant, non coding transcript variant, 5 prime UTR variant, missense variant, intron variant, upstream transcript variant, initiator codon variant |
rs1555889031 |
G>A |
Pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, missense variant, 3 prime UTR variant |
rs1555889131 |
G>A |
Pathogenic |
Genic downstream transcript variant, downstream transcript variant, splice donor variant |
rs1555891562 |
G>A |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, missense variant, downstream transcript variant, 3 prime UTR variant |
rs1555891584 |
G>A |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, missense variant, downstream transcript variant, 3 prime UTR variant |
rs1555891728 |
CGCTGAGAAAGTCCT>- |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, inframe deletion |
rs1555891743 |
A>T |
Pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, stop gained, 3 prime UTR variant |
rs1569015549 |
A>C |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, missense variant, 3 prime UTR variant |
rs1569020396 |
C>T |
Pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, stop gained, 3 prime UTR variant |
rs1569031388 |
->C |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, frameshift variant |
rs1569032751 |
CAT>- |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, inframe deletion |
rs1601115202 |
A>T |
Pathogenic |
Stop gained, non coding transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant |
rs1601115231 |
C>T |
Pathogenic |
Stop gained, non coding transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant |
rs1601162438 |
C>T |
Pathogenic |
Non coding transcript variant, downstream transcript variant, coding sequence variant, missense variant, genic downstream transcript variant, 3 prime UTR variant |
rs1601163749 |
C>- |
Pathogenic |
Non coding transcript variant, downstream transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, frameshift variant |
rs1601164303 |
->GG |
Pathogenic |
Non coding transcript variant, downstream transcript variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant, frameshift variant |
rs1601164378 |
G>C |
Pathogenic |
Downstream transcript variant, splice donor variant, genic downstream transcript variant |
rs1601166850 |
T>C |
Likely-pathogenic |
Splice donor variant, genic downstream transcript variant |
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miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
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Transcription factor |
Regulation |
Reference |
GATA1 |
Unknown |
11418466 |
YY1 |
Unknown |
18458536 |
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
O95467 |
Protein name |
Neuroendocrine secretory protein 55 (NESP55) [Cleaved into: LHAL tetrapeptide; GPIPIRRH peptide] |
UniProt ID |
P63092 |
Protein name |
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (EC 3.6.5.-) (Adenylate cyclase-stimulating G alpha protein) |
Protein function |
Guanine nucleotide-binding proteins (G proteins) function as transducers in numerous signaling pathways controlled by G protein-coupled receptors (GPCRs) (PubMed:12391161, PubMed:17110384, PubMed:21488135, PubMed:26206488, PubMed:8702665, PubMed |
PDB |
5G53
,
5UZ7
,
5VAI
,
6AU6
,
6B3J
,
6E3Y
,
6E67
,
6EG8
,
6GDG
,
6LI3
,
6LMK
,
6LPB
,
6M1H
,
6M1I
,
6NI3
,
6NIY
,
6ORV
,
6P9X
,
6P9Y
,
6PB0
,
6PB1
,
6UUN
,
6UUS
,
6UVA
,
6VCB
,
6VN7
,
6WHC
,
6WI9
,
6WPW
,
6WZG
,
6X18
,
6X19
,
6X1A
,
6XOX
,
7AUE
,
7BB6
,
7BB7
,
7BPH
,
7BW0
,
7BZ2
,
7C2E
,
7CFM
,
7CFN
,
7CKW
,
7CKX
,
7CKY
,
7CKZ
,
7CRH
,
7CX2
,
7CX3
,
7CX4
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UniProt ID |
P84996 |
Protein name |
Protein ALEX (Alternative gene product encoded by XL-exon) |
Protein function |
May inhibit the adenylyl cyclase-stimulating activity of guanine nucleotide-binding protein G(s) subunit alpha which is produced from the same locus in a different open reading frame. |
UniProt ID |
Q5JWF2 |
Protein name |
Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas (EC 3.6.5.-) (Adenylate cyclase-stimulating G alpha protein) (Extra large alphas protein) (XLalphas) |
Protein function |
Guanine nucleotide-binding proteins (G proteins) function as transducers in numerous signaling pathways controlled by G protein-coupled receptors (GPCRs). The alpha chain contains the guanine nucleotide binding site and alternates between an act |
PDB |
8I2G
,
8JHB
,
8JHI
,
8WW2
,
9BKK
,
9J1P
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00503 |
G-alpha |
663 → 1026 |
G-protein alpha subunit |
Domain |
|
Sequence |
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Sequence length |
1037 |
Interactions |
View interactions |
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