Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
1958 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Early growth response 1 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
EGR1 |
SynonymsGene synonyms aliases
|
AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268, ZIF268, ZNF225 |
ChromosomeChromosome number
|
5 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
5q31.2 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene belongs to the EGR family of C2H2-type zinc-finger proteins. It is a nuclear protein and functions as a transcriptional regulator. The products of target genes it activates are required for differentitation and mitogenesis |
miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000122 |
Process |
Negative regulation of transcription by RNA polymerase II |
IEA |
|
GO:0000785 |
Component |
Chromatin |
IDA |
19307576 |
GO:0000785 |
Component |
Chromatin |
ISA |
|
GO:0000976 |
Function |
Transcription regulatory region sequence-specific DNA binding |
IDA |
18718911 |
GO:0000977 |
Function |
RNA polymerase II transcription regulatory region sequence-specific DNA binding |
IDA |
14979875, 19307576 |
GO:0000978 |
Function |
RNA polymerase II cis-regulatory region sequence-specific DNA binding |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ISA |
|
GO:0001228 |
Function |
DNA-binding transcription activator activity, RNA polymerase II-specific |
IDA |
19307576 |
GO:0001666 |
Process |
Response to hypoxia |
ISS |
|
GO:0002931 |
Process |
Response to ischemia |
ISS |
|
GO:0003677 |
Function |
DNA binding |
IDA |
12560508 |
GO:0003700 |
Function |
DNA-binding transcription factor activity |
IDA |
12560508 |
GO:0005515 |
Function |
Protein binding |
IPI |
19057511, 21743491 |
GO:0005634 |
Component |
Nucleus |
IDA |
19057511, 20018936, 20363028 |
GO:0005634 |
Component |
Nucleus |
ISS |
|
GO:0005654 |
Component |
Nucleoplasm |
IDA |
|
GO:0005654 |
Component |
Nucleoplasm |
TAS |
|
GO:0005737 |
Component |
Cytoplasm |
IDA |
19057511, 20363028 |
GO:0005737 |
Component |
Cytoplasm |
ISS |
|
GO:0006357 |
Process |
Regulation of transcription by RNA polymerase II |
IBA |
21873635 |
GO:0008270 |
Function |
Zinc ion binding |
IDA |
25258363 |
GO:0009749 |
Process |
Response to glucose |
IEA |
|
GO:0010385 |
Function |
Double-stranded methylated DNA binding |
IDA |
25258363 |
GO:0010628 |
Process |
Positive regulation of gene expression |
IMP |
24244514 |
GO:0030217 |
Process |
T cell differentiation |
IEA |
|
GO:0030509 |
Process |
BMP signaling pathway |
IEA |
|
GO:0032722 |
Process |
Positive regulation of chemokine production |
ISS |
|
GO:0032731 |
Process |
Positive regulation of interleukin-1 beta production |
ISS |
|
GO:0032868 |
Process |
Response to insulin |
IEA |
|
GO:0032922 |
Process |
Circadian regulation of gene expression |
ISS |
|
GO:0033233 |
Process |
Regulation of protein sumoylation |
IDA |
19057511 |
GO:0035035 |
Function |
Histone acetyltransferase binding |
IPI |
20018936 |
GO:0035914 |
Process |
Skeletal muscle cell differentiation |
IEA |
|
GO:0042981 |
Process |
Regulation of apoptotic process |
IEA |
|
GO:0043565 |
Function |
Sequence-specific DNA binding |
IDA |
1662794, 25258363 |
GO:0044729 |
Function |
Hemi-methylated DNA-binding |
IDA |
25258363 |
GO:0044849 |
Process |
Estrous cycle |
ISS |
|
GO:0045475 |
Process |
Locomotor rhythm |
ISS |
|
GO:0045893 |
Process |
Positive regulation of transcription, DNA-templated |
IDA |
12560508 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IDA |
19057511, 26089202 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IGI |
14979875 |
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IMP |
14979875, 20018936 |
GO:0046886 |
Process |
Positive regulation of hormone biosynthetic process |
ISS |
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GO:0060086 |
Process |
Circadian temperature homeostasis |
ISS |
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GO:0060337 |
Process |
Type I interferon signaling pathway |
TAS |
|
GO:0061418 |
Process |
Regulation of transcription from RNA polymerase II promoter in response to hypoxia |
IEA |
|
GO:0070498 |
Process |
Interleukin-1-mediated signaling pathway |
IMP |
20018936 |
GO:0071480 |
Process |
Cellular response to gamma radiation |
IEA |
|
GO:0071504 |
Process |
Cellular response to heparin |
ISS |
|
GO:0071506 |
Process |
Cellular response to mycophenolic acid |
ISS |
|
GO:0072110 |
Process |
Glomerular mesangial cell proliferation |
ISS |
|
GO:0072303 |
Process |
Positive regulation of glomerular metanephric mesangial cell proliferation |
ISS |
|
GO:0090090 |
Process |
Negative regulation of canonical Wnt signaling pathway |
IEA |
|
GO:0098759 |
Process |
Cellular response to interleukin-8 |
IDA |
20363028 |
GO:1901216 |
Process |
Positive regulation of neuron death |
ISS |
|
GO:1902895 |
Process |
Positive regulation of pri-miRNA transcription by RNA polymerase II |
IDA |
19307576 |
GO:1902949 |
Process |
Positive regulation of tau-protein kinase activity |
ISS |
|
GO:1990837 |
Function |
Sequence-specific double-stranded DNA binding |
IDA |
28473536 |
GO:1990841 |
Function |
Promoter-specific chromatin binding |
IDA |
20363028 |
GO:2000182 |
Process |
Regulation of progesterone biosynthetic process |
ISS |
|
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P18146 |
Protein name |
Early growth response protein 1 (EGR-1) (AT225) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor ETR103) (Transcription factor Zif268) (Zinc finger protein 225) (Zinc finger protein Krox-24) |
Protein function |
Transcriptional regulator (PubMed:20121949). Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes (By similarity). Binds double-stranded target DNA, irrespective of the cytosine methylatio |
PDB |
4R2A
,
4R2C
,
4R2D
,
4X9J
,
5N14
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF11928 |
DUF3446 |
135 → 219 |
Early growth response N-terminal domain |
Domain |
PF00096 |
zf-C2H2 |
338 → 362 |
Zinc finger, C2H2 type |
Domain |
PF00096 |
zf-C2H2 |
368 → 390 |
Zinc finger, C2H2 type |
Domain |
PF00096 |
zf-C2H2 |
396 → 418 |
Zinc finger, C2H2 type |
Domain |
PF11914 |
DUF3432 |
424 → 462 |
Domain of unknown function (DUF3432) |
Repeat |
PF11914 |
DUF3432 |
452 → 530 |
Domain of unknown function (DUF3432) |
Repeat |
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Sequence |
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Sequence length |
543 |
Interactions |
View interactions |