GediPNet logo

CTNNA1 (catenin alpha 1)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1495
Gene nameGene Name - the full gene name approved by the HGNC.
Catenin alpha 1
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
CTNNA1
SynonymsGene synonyms aliases
CAP102, MDBS2, MDPT2
ChromosomeChromosome number
5
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q31.2
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the catenin family of proteins that play an important role in cell adhesion process by connecting cadherins located on the plasma membrane to the actin filaments inside the cell. The encoded mechanosensing protein contains th
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs755215402 T>A,C,G Pathogenic, likely-benign Missense variant, 5 prime UTR variant, coding sequence variant, intron variant, synonymous variant
rs869312766 TGAA>- Likely-pathogenic Intron variant, genic upstream transcript variant, coding sequence variant, frameshift variant, 5 prime UTR variant
rs869320696 T>C Pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
rs869320697 G>A Pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
rs1554085478 C>T Uncertain-significance, likely-pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020722 hsa-miR-155-5p Proteomics 18668040
MIRT039674 hsa-miR-615-3p CLASH 23622248
MIRT039085 hsa-miR-769-3p CLASH 23622248
MIRT038473 hsa-miR-296-3p CLASH 23622248
MIRT037739 hsa-miR-744-5p CLASH 23622248
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001541 Process Ovarian follicle development IEA
GO:0001669 Component Acrosomal vesicle IEA
GO:0003723 Function RNA binding HDA 22658674
GO:0005198 Function Structural molecule activity IEA
GO:0005515 Function Protein binding IPI 12477722, 15657067, 16212417, 17098867, 17620599, 18093941, 19016843, 20936779, 22750944, 23292143, 24189400, 24509793, 25241761, 25764135, 26496610, 28051089
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P35221
Protein name Catenin alpha-1 (Alpha E-catenin) (Cadherin-associated protein) (Renal carcinoma antigen NY-REN-13)
Protein function Associates with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion
PDB 1H6G , 4EHP , 4IGG , 6UPV , 6V2O , 6V2P , 7UTJ , 9BL2 , 9BL3 , 9BL4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01044 Vinculin
19 339
Vinculin family
Family
PF01044 Vinculin
333 867
Vinculin family
Family
Sequence
MTAVHAGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHV
LAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVK
RGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKAL
KPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKAN
RDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPLSFSEER
FRPSLEERLESIISGAALMADSSCTRDDRRER
IVAECNAVRQALQDLLSEYMGNAGRKER
SDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYA
QVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLA
QENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDR
TAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSS
DPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSVQTED
DQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMC
MIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYL
QRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVAS
TKYQKSQGMASLNLPAVSWKMKAPEKK
PLVKREKQDETQTKIKRASQKKHVNPVQALSEF
KAMDSI
Sequence length 906
Interactions View interactions

| © 2021, Biomedical Informatics Centre, NIRRH |
ICMR-National Institute for Research in Reproductive Health, Jehangir Merwanji Street, Parel, Mumbai-400012
Tel: +91-22-24192104, Fax No: +91-22-24139412